KEGG   PATHWAY: pit03430
Entry
pit03430                    Pathway                                
Name
Mismatch repair - Prevotella intermedia
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
pit03430  Mismatch repair
pit03430

Other DBs
GO: 0006298
Organism
Prevotella intermedia [GN:pit]
Gene
PIN17_A0541  mutS; DNA mismatch repair protein MutS [KO:K03555]
PIN17_0268  Smr domain protein [KO:K07456]
PIN17_A0090  DNA mismatch repair protein, C-terminal domain protein [KO:K03572]
PIN17_0083  UvrD/REP helicase N-terminal domain protein [KO:K03657] [EC:5.6.2.4]
PIN17_A0811  hypothetical protein [KO:K03657] [EC:5.6.2.4]
PIN17_A1337  putative exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
PIN17_A1338  xseB; exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
PIN17_A1674  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
PIN17_A1600  ssb; single-stranded DNA-binding protein [KO:K03111]
PIN17_A1937  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
PIN17_0439  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
PIN17_0136  dnaX; DNA polymerase III, subunit gamma and tau [KO:K02343] [EC:2.7.7.7]
PIN17_A1151  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
PIN17_A1206  DNA polymerase III, delta subunit [KO:K02341] [EC:2.7.7.7]
PIN17_0440  exonuclease [KO:K02342] [EC:2.7.7.7]
PIN17_A2003  exonuclease [KO:K02342] [EC:2.7.7.7]
PIN17_A1373  NAD-dependent DNA ligase domain protein [KO:K01972] [EC:6.5.1.2]
PIN17_A1860  dam_2; DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
PIN17_0251  dam_1; DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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