KEGG   PATHWAY: pkh00020
Entry
pkh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas khazarica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pkh00020  Citrate cycle (TCA cycle)
pkh00020

Module
pkh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pkh00020]
pkh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pkh00020]
pkh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pkh00020]
pkh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pkh00020]
pkh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pkh00020]
Other DBs
GO: 0006099
Organism
Pseudomonas khazarica [GN:pkh]
Gene
JLK41_11315  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JLK41_15635  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JLK41_10835  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JLK41_11995  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JLK41_12000  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JLK41_11340  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JLK41_11345  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JLK41_05515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JLK41_11350  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JLK41_11360  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JLK41_11355  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JLK41_24190  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
JLK41_11330  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JLK41_11335  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JLK41_11320  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
JLK41_11325  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
JLK41_14585  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JLK41_04530  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JLK41_08810  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JLK41_20345  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
JLK41_24590  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
JLK41_24585  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
JLK41_01790  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
JLK41_02775  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
JLK41_02770  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pkh00010  Glycolysis / Gluconeogenesis
pkh00053  Ascorbate and aldarate metabolism
pkh00061  Fatty acid biosynthesis
pkh00071  Fatty acid degradation
pkh00190  Oxidative phosphorylation
pkh00220  Arginine biosynthesis
pkh00250  Alanine, aspartate and glutamate metabolism
pkh00280  Valine, leucine and isoleucine degradation
pkh00350  Tyrosine metabolism
pkh00470  D-Amino acid metabolism
pkh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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