KEGG   PATHWAY: pki00020
Entry
pki00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paramormyrops kingsleyae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pki00020  Citrate cycle (TCA cycle)
pki00020

Module
pki_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pki00020]
pki_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pki00020]
pki_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pki00020]
pki_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pki00020]
pki_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pki00020]
Other DBs
GO: 0006099
Organism
Paramormyrops kingsleyae [GN:pki]
Gene
111840346  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111855058  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
111842517  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
111855971  acly; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
111845265  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111853220  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111848721  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
111851612  idh1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
111845757  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
111859373  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
111847279  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
111843808  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
111855268  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111851448  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
111857504  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
111852483  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
111857772  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
111837362  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111834575  suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111854127  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111852695  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
111853647  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
111833137  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
111833904  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
111853719  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
111850773  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
111859371  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
111844697  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
111847838  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111839535  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
111835210  pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
111835611  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
111835223  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
111860992  pdha1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
111857269  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
111837507  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
111855770  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
111844788  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pki00010  Glycolysis / Gluconeogenesis
pki00053  Ascorbate and aldarate metabolism
pki00061  Fatty acid biosynthesis
pki00062  Fatty acid elongation
pki00071  Fatty acid degradation
pki00190  Oxidative phosphorylation
pki00220  Arginine biosynthesis
pki00250  Alanine, aspartate and glutamate metabolism
pki00280  Valine, leucine and isoleucine degradation
pki00350  Tyrosine metabolism
pki00470  D-Amino acid metabolism
pki00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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