KEGG   PATHWAY: pks00020
Entry
pks00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Priestia koreensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pks00020  Citrate cycle (TCA cycle)
pks00020

Module
pks_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pks00020]
pks_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pks00020]
pks_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pks00020]
pks_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pks00020]
pks_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pks00020]
Other DBs
GO: 0006099
Organism
Priestia koreensis [GN:pks]
Gene
IE339_20415  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
IE339_11340  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
IE339_20410  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IE339_09020  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
IE339_09025  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
IE339_05545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IE339_18520  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IE339_16715  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IE339_16710  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IE339_17260  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IE339_17265  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IE339_23365  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
IE339_20175  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IE339_20170  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IE339_20180  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
IE339_02490  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IE339_08820  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IE339_20405  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IE339_23405  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
IE339_05675  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
IE339_20925  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
IE339_05530  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
IE339_05535  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
IE339_04035  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
IE339_05540  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pks00010  Glycolysis / Gluconeogenesis
pks00053  Ascorbate and aldarate metabolism
pks00061  Fatty acid biosynthesis
pks00071  Fatty acid degradation
pks00190  Oxidative phosphorylation
pks00220  Arginine biosynthesis
pks00250  Alanine, aspartate and glutamate metabolism
pks00280  Valine, leucine and isoleucine degradation
pks00350  Tyrosine metabolism
pks00470  D-Amino acid metabolism
pks00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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