KEGG   PATHWAY: pmeg00630
Entry
pmeg00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia megapolitana
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmeg00630  Glyoxylate and dicarboxylate metabolism
pmeg00630

Module
pmeg_M00012  Glyoxylate cycle [PATH:pmeg00630]
pmeg_M00621  Glycine cleavage system [PATH:pmeg00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia megapolitana [GN:pmeg]
Gene
FNZ07_24870  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
FNZ07_20150  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FNZ07_00830  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
FNZ07_24890  malate synthase A [KO:K01638] [EC:2.3.3.9]
FNZ07_06030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FNZ07_20435  citrate synthase [KO:K01647] [EC:2.3.3.1]
FNZ07_00770  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FNZ07_29485  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
FNZ07_06065  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FNZ07_11870  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
FNZ07_03160  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FNZ07_06005  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FNZ07_21550  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FNZ07_22330  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FNZ07_22360  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
FNZ07_22745  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
FNZ07_14915  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
FNZ07_22335  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
FNZ07_07860  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
FNZ07_16295  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
FNZ07_16290  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
FNZ07_16285  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
FNZ07_00635  catalase [KO:K03781] [EC:1.11.1.6]
FNZ07_11410  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
FNZ07_16260  catalase [KO:K03781] [EC:1.11.1.6]
FNZ07_02770  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FNZ07_14865  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FNZ07_24080  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
FNZ07_27610  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
FNZ07_23555  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
FNZ07_27565  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
FNZ07_31030  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
FNZ07_16715  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
FNZ07_05475  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
FNZ07_09045  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
FNZ07_25595  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
FNZ07_01320  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FNZ07_11810  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FNZ07_10350  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FNZ07_16605  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FNZ07_33075  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
FNZ07_33065  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
FNZ07_21385  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FNZ07_25420  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FNZ07_33070  gcvH; glycine cleavage system protein GcvH [KO:K02437]
FNZ07_22045  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
FNZ07_22040  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
FNZ07_22035  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
FNZ07_27205  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
FNZ07_22535  glycerate kinase [KO:K00865] [EC:2.7.1.165]
FNZ07_08455  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
FNZ07_08715  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FNZ07_14505  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FNZ07_15975  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FNZ07_17790  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
FNZ07_05005  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
FNZ07_06340  NAD-dependent formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
FNZ07_28055  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
FNZ07_28050  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
FNZ07_28045  formate dehydrogenase [KO:K00124]
FNZ07_28040  formate dehydrogenase [KO:K00127]
FNZ07_24395  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
FNZ07_29745  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
FNZ07_17835  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FNZ07_10495  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FNZ07_15650  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FNZ07_20395  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
FNZ07_11425  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
FNZ07_02380  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
FNZ07_11430  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pmeg00010  Glycolysis / Gluconeogenesis
pmeg00020  Citrate cycle (TCA cycle)
pmeg00030  Pentose phosphate pathway
pmeg00053  Ascorbate and aldarate metabolism
pmeg00071  Fatty acid degradation
pmeg00230  Purine metabolism
pmeg00250  Alanine, aspartate and glutamate metabolism
pmeg00260  Glycine, serine and threonine metabolism
pmeg00620  Pyruvate metabolism
pmeg00710  Carbon fixation by Calvin cycle
pmeg00750  Vitamin B6 metabolism
pmeg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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