KEGG   PATHWAY: pmeg00030
Entry
pmeg00030                   Pathway                                
Name
Pentose phosphate pathway - Paraburkholderia megapolitana
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmeg00030  Pentose phosphate pathway
pmeg00030

Module
pmeg_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pmeg00030]
pmeg_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pmeg00030]
pmeg_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pmeg00030]
pmeg_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pmeg00030]
pmeg_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pmeg00030]
Other DBs
GO: 0006098
Organism
Paraburkholderia megapolitana [GN:pmeg]
Gene
FNZ07_22680  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
FNZ07_28645  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
FNZ07_05370  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
FNZ07_10025  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
FNZ07_28650  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
FNZ07_19310  lactonase family protein [KO:K07404] [EC:3.1.1.31]
FNZ07_02270  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
FNZ07_09830  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
FNZ07_31025  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
FNZ07_09825  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
FNZ07_15905  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
FNZ07_19240  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
FNZ07_21705  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
FNZ07_17940  6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
FNZ07_07950  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
FNZ07_01630  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
FNZ07_23990  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
FNZ07_01615  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
FNZ07_17310  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
FNZ07_18395  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
FNZ07_02150  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
FNZ07_15540  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
FNZ07_15970  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
FNZ07_15975  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FNZ07_06300  GMC family oxidoreductase [KO:K19813] [EC:1.1.5.9]
FNZ07_03615  glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
FNZ07_07550  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
FNZ07_16485  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
FNZ07_24080  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
FNZ07_27610  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
FNZ07_15985  gluconokinase [KO:K00851] [EC:2.7.1.12]
FNZ07_24090  sugar kinase [KO:K00874] [EC:2.7.1.45]
FNZ07_09185  aminotransferase class V-fold PLP-dependent enzyme [KO:K17468] [EC:4.3.1.29]
FNZ07_00945  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
FNZ07_29970  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
FNZ07_28255  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pmeg00010  Glycolysis / Gluconeogenesis
pmeg00040  Pentose and glucuronate interconversions
pmeg00052  Galactose metabolism
pmeg00230  Purine metabolism
pmeg00240  Pyrimidine metabolism
pmeg00340  Histidine metabolism
pmeg00630  Glyoxylate and dicarboxylate metabolism
pmeg00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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