KEGG   PATHWAY: pmei00020
Entry
pmei00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Poecilia mexicana (shortfin molly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmei00020  Citrate cycle (TCA cycle)
pmei00020

Module
pmei_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmei00020]
pmei_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmei00020]
pmei_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmei00020]
pmei_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmei00020]
pmei_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmei00020]
Other DBs
GO: 0006099
Organism
Poecilia mexicana (shortfin molly) [GN:pmei]
Gene
106917054  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
106926202  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
106921562  acly; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
106909656  aco1; cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
106930075  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
106930566  aco2; aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
106917647  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
106921438  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
106931419  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
106905448  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
106914953  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
106926795  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
106927197  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
106915212  ogdh; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
106908470  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
106920007  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
106903771  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
106925586  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
106928941  suclg1; succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
106903442  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106927238  sucla2; succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106928709  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
106928075  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
106929635  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
106933344  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
106911402  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
106930488  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
106913728  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
106927296  mdh1; malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
106908802  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
106911840  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
106925483  pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
106909565  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
106926981  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
106921894  pdha1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
106928397  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
106917364  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
106921432  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmei00010  Glycolysis / Gluconeogenesis
pmei00053  Ascorbate and aldarate metabolism
pmei00061  Fatty acid biosynthesis
pmei00062  Fatty acid elongation
pmei00071  Fatty acid degradation
pmei00190  Oxidative phosphorylation
pmei00220  Arginine biosynthesis
pmei00250  Alanine, aspartate and glutamate metabolism
pmei00280  Valine, leucine and isoleucine degradation
pmei00350  Tyrosine metabolism
pmei00470  D-Amino acid metabolism
pmei00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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