KEGG   PATHWAY: pmq00030
Entry
pmq00030                    Pathway                                
Name
Pentose phosphate pathway - Paenibacillus mucilaginosus 3016
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmq00030  Pentose phosphate pathway
pmq00030

Module
pmq_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pmq00030]
pmq_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pmq00030]
pmq_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pmq00030]
pmq_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pmq00030]
pmq_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:pmq00030]
pmq_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:pmq00030]
Other DBs
GO: 0006098
Organism
Paenibacillus mucilaginosus 3016 [GN:pmq]
Gene
PM3016_582  Pgi [KO:K01810] [EC:5.3.1.9]
PM3016_965  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PM3016_519  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
PM3016_6746  hypothetical protein [KO:K07404] [EC:3.1.1.31]
PM3016_714  YqeC [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PM3016_5312  YqjI [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PM3016_5239  Rpe [KO:K01783] [EC:5.1.3.1]
PM3016_4191  transketolase domain-containing protein [KO:K00615] [EC:2.2.1.1]
PM3016_4192  transketolase domain-containing protein [KO:K00615] [EC:2.2.1.1]
PM3016_5684  Tkt2 [KO:K00615] [EC:2.2.1.1]
PM3016_579  Tkt [KO:K00615] [EC:2.2.1.1]
PM3016_3347  hypothetical protein [KO:K00615] [EC:2.2.1.1]
PM3016_3348  hypothetical protein [KO:K00615] [EC:2.2.1.1]
PM3016_4335  hypothetical protein [KO:K00615] [EC:2.2.1.1]
PM3016_4336  transketolase [KO:K00615] [EC:2.2.1.1]
PM3016_2230  Transketolase domain protein [KO:K00615] [EC:2.2.1.1]
PM3016_2231  Transketolase central region [KO:K00615] [EC:2.2.1.1]
PM3016_1917  Tal [KO:K00616] [EC:2.2.1.2]
PM3016_5683  Tal2 [KO:K00616] [EC:2.2.1.2]
PM3016_3602  ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
PM3016_39  YwlF [KO:K01808] [EC:5.3.1.6]
PM3016_7402  HxlA [KO:K08093] [EC:4.1.2.43]
PM3016_7401  6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
PM3016_4697  DeoC [KO:K01619] [EC:4.1.2.4]
PM3016_1340  ribokinase [KO:K00852] [EC:2.7.1.15]
PM3016_2063  ribokinase [KO:K00852] [EC:2.7.1.15]
PM3016_4694  DeoB [KO:K01839] [EC:5.4.2.7]
PM3016_78  PgcA [KO:K01835] [EC:5.4.2.2]
PM3016_4437  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
PM3016_184  Prs [KO:K00948] [EC:2.7.6.1]
PM3016_506  hypothetical protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PM3016_4183  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PM3016_1837  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PM3016_2623  short-chain dehydrogenase/reductase SDR [KO:K00034] [EC:1.1.1.47]
PM3016_1853  glucose dehydrogenase [KO:K22969] [EC:1.1.1.47]
PM3016_3252  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PM3016_715  GntK [KO:K25031] [EC:2.7.1.12]
PM3016_5314  gluconokinase [KO:K25031] [EC:2.7.1.12]
PM3016_505  PfkB domain-containing protein [KO:K00874] [EC:2.7.1.45]
PM3016_5731  Fba [KO:K01624] [EC:4.1.2.13]
PM3016_7181  FbaA [KO:K01624] [EC:4.1.2.13]
PM3016_931  YwjI [KO:K02446] [EC:3.1.3.11]
PM3016_1902  PfkA [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pmq00010  Glycolysis / Gluconeogenesis
pmq00040  Pentose and glucuronate interconversions
pmq00052  Galactose metabolism
pmq00230  Purine metabolism
pmq00240  Pyrimidine metabolism
pmq00340  Histidine metabolism
pmq00630  Glyoxylate and dicarboxylate metabolism
pmq00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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