KEGG   PATHWAY: pnr00630
Entry
pnr00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pandoraea norimbergensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
pnr00630  Glyoxylate and dicarboxylate metabolism
pnr00630

Module
pnr_M00012  Glyoxylate cycle [PATH:pnr00630]
pnr_M00621  Glycine cleavage system [PATH:pnr00630]
Other DBs
GO: 0046487 0043648
Organism
Pandoraea norimbergensis [GN:pnr]
Gene
AT302_22525  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
AT302_16795  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
AT302_17500  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
AT302_13210  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
AT302_26415  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
AT302_08510  malate synthase G [KO:K01638] [EC:2.3.3.9]
AT302_22465  malate synthase A [KO:K01638] [EC:2.3.3.9]
AT302_24445  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AT302_21035  excisionase [KO:K01647] [EC:2.3.3.1]
AT302_26795  citrate synthase [KO:K01647] [EC:2.3.3.1]
AT302_24410  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AT302_19505  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AT302_25925  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AT302_24455  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AT302_16640  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AT302_10255  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AT302_18240  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AT302_17750  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AT302_17775  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AT302_02130  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AT302_17755  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AT302_18790  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AT302_03210  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
AT302_03835  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
AT302_03220  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
AT302_03840  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
AT302_03845  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
AT302_09840  catalase [KO:K03781] [EC:1.11.1.6]
AT302_13120  catalase [KO:K03781] [EC:1.11.1.6]
AT302_13300  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AT302_10145  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AT302_11695  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AT302_12870  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AT302_03790  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AT302_26885  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AT302_03740  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AT302_05420  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
AT302_14595  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
AT302_23560  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
AT302_14950  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AT302_07300  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
AT302_07310  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AT302_17570  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AT302_23875  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AT302_07305  glycine cleavage system protein H [KO:K02437]
AT302_22720  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
AT302_22725  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
AT302_22730  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
AT302_00985  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
AT302_16375  glycerate kinase [KO:K00865] [EC:2.7.1.165]
AT302_12210  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
AT302_12885  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AT302_12055  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
AT302_26255  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
AT302_21805  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
AT302_26055  formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
AT302_26060  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
AT302_26250  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
AT302_26050  formate dehydrogenase subunit beta [KO:K00124]
AT302_26245  formate dehydrogenase [KO:K00124]
AT302_26045  formate dehydrogenase subunit gamma [KO:K00127]
AT302_26240  formate dehydrogenase subunit gamma [KO:K00127]
AT302_15050  esterase [KO:K01432] [EC:3.5.1.9]
AT302_22165  esterase [KO:K01432] [EC:3.5.1.9]
AT302_14220  arylformamidase [KO:K07130] [EC:3.5.1.9]
AT302_11200  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AT302_20720  formamidase [KO:K01455] [EC:3.5.1.49]
AT302_18025  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
AT302_26215  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pnr00010  Glycolysis / Gluconeogenesis
pnr00020  Citrate cycle (TCA cycle)
pnr00030  Pentose phosphate pathway
pnr00053  Ascorbate and aldarate metabolism
pnr00071  Fatty acid degradation
pnr00230  Purine metabolism
pnr00250  Alanine, aspartate and glutamate metabolism
pnr00260  Glycine, serine and threonine metabolism
pnr00620  Pyruvate metabolism
pnr00750  Vitamin B6 metabolism
pnr00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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