KEGG   PATHWAY: pns00020
Entry
pns00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Erythrobacter neustonensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pns00020  Citrate cycle (TCA cycle)
pns00020

Module
pns_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pns00020]
pns_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pns00020]
pns_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pns00020]
pns_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pns00020]
pns_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pns00020]
Other DBs
GO: 0006099
Organism
Erythrobacter neustonensis [GN:pns]
Gene
A9D12_12555  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A9D12_06835  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A9D12_13530  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A9D12_13710  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A9D12_13715  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A9D12_13720  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9D12_12270  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9D12_08185  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9D12_13705  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A9D12_04160  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A9D12_13030  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A9D12_12760  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A9D12_13040  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A9D12_13035  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A9D12_04625  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
A9D12_13695  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A9D12_09305  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A9D12_12440  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A9D12_12435  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
A9D12_12255  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pns00010  Glycolysis / Gluconeogenesis
pns00053  Ascorbate and aldarate metabolism
pns00061  Fatty acid biosynthesis
pns00071  Fatty acid degradation
pns00190  Oxidative phosphorylation
pns00220  Arginine biosynthesis
pns00250  Alanine, aspartate and glutamate metabolism
pns00280  Valine, leucine and isoleucine degradation
pns00350  Tyrosine metabolism
pns00470  D-Amino acid metabolism
pns00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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