KEGG   PATHWAY: pof00020
Entry
pof00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pontibacillus sp. HMF3514
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pof00020  Citrate cycle (TCA cycle)
pof00020

Module
pof_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pof00020]
pof_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pof00020]
pof_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pof00020]
pof_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pof00020]
pof_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pof00020]
Other DBs
GO: 0006099
Organism
Pontibacillus sp. HMF3514 [GN:pof]
Gene
GS400_14900  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
GS400_12090  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
GS400_09785  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GS400_07290  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
GS400_14895  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GS400_03655  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GS400_03660  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GS400_11765  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GS400_08325  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GS400_13040  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GS400_09580  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GS400_09585  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GS400_09105  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GS400_09100  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GS400_14655  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GS400_14650  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GS400_14660  succinate dehydrogenase [KO:K00241]
GS400_04390  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GS400_14890  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GS400_19705  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GS400_08460  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GS400_15470  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GS400_08310  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GS400_08315  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
GS400_08320  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pof00010  Glycolysis / Gluconeogenesis
pof00053  Ascorbate and aldarate metabolism
pof00061  Fatty acid biosynthesis
pof00071  Fatty acid degradation
pof00190  Oxidative phosphorylation
pof00220  Arginine biosynthesis
pof00250  Alanine, aspartate and glutamate metabolism
pof00280  Valine, leucine and isoleucine degradation
pof00350  Tyrosine metabolism
pof00470  D-Amino acid metabolism
pof00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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