KEGG   PATHWAY: poo00020
Entry
poo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Polaromonas sp. Pch-P
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
poo00020  Citrate cycle (TCA cycle)
poo00020

Module
poo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:poo00020]
poo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:poo00020]
poo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:poo00020]
Other DBs
GO: 0006099
Organism
Polaromonas sp. Pch-P [GN:poo]
Gene
F7R28_18255  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
F7R28_10170  citrate synthase [KO:K01647] [EC:2.3.3.1]
F7R28_18145  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F7R28_18200  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
F7R28_13055  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
F7R28_12455  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
F7R28_12130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F7R28_12460  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F7R28_01800  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
F7R28_01805  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
F7R28_18240  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F7R28_18245  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
F7R28_18230  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
F7R28_18235  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
F7R28_10740  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
F7R28_10750  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
F7R28_18220  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F7R28_03230  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
F7R28_12115  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
F7R28_19120  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
F7R28_12120  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
poo00010  Glycolysis / Gluconeogenesis
poo00053  Ascorbate and aldarate metabolism
poo00061  Fatty acid biosynthesis
poo00071  Fatty acid degradation
poo00190  Oxidative phosphorylation
poo00220  Arginine biosynthesis
poo00250  Alanine, aspartate and glutamate metabolism
poo00280  Valine, leucine and isoleucine degradation
poo00350  Tyrosine metabolism
poo00470  D-Amino acid metabolism
poo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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