KEGG   PATHWAY: ppab00020
Entry
ppab00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus pabuli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppab00020  Citrate cycle (TCA cycle)
ppab00020

Module
ppab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppab00020]
ppab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppab00020]
ppab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppab00020]
ppab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppab00020]
Other DBs
GO: 0006099
Organism
Paenibacillus pabuli [GN:ppab]
Gene
KET34_10505  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
KET34_03620  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KET34_10510  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KET34_09330  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KET34_09335  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KET34_22770  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KET34_04310  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KET34_20905  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KET34_12560  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KET34_12555  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KET34_28500  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KET34_28495  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KET34_28505  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
KET34_16890  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KET34_10515  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KET34_33750  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KET34_20920  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KET34_20915  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KET34_20910  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppab00010  Glycolysis / Gluconeogenesis
ppab00053  Ascorbate and aldarate metabolism
ppab00061  Fatty acid biosynthesis
ppab00071  Fatty acid degradation
ppab00190  Oxidative phosphorylation
ppab00220  Arginine biosynthesis
ppab00250  Alanine, aspartate and glutamate metabolism
ppab00280  Valine, leucine and isoleucine degradation
ppab00350  Tyrosine metabolism
ppab00470  D-Amino acid metabolism
ppab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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