KEGG   PATHWAY: ppec00020
Entry
ppec00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Polaribacter pectinis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppec00020  Citrate cycle (TCA cycle)
ppec00020

Module
ppec_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppec00020]
ppec_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppec00020]
ppec_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppec00020]
ppec_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppec00020]
ppec_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppec00020]
Other DBs
GO: 0006099
Organism
Polaribacter pectinis [GN:ppec]
Gene
H9W90_08320  citrate synthase [KO:K01647] [EC:2.3.3.1]
H9W90_04955  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
H9W90_06840  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H9W90_11400  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
H9W90_07605  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
H9W90_11395  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
H9W90_02940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H9W90_10900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H9W90_07145  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
H9W90_05910  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
H9W90_12375  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H9W90_12370  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H9W90_12380  succinate dehydrogenase cytochrome b subunit [KO:K00241]
H9W90_03000  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
H9W90_08980  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H9W90_07355  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
H9W90_00025  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
H9W90_00215  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
H9W90_05115  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
H9W90_07580  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
H9W90_00290  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
H9W90_07585  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppec00010  Glycolysis / Gluconeogenesis
ppec00053  Ascorbate and aldarate metabolism
ppec00061  Fatty acid biosynthesis
ppec00071  Fatty acid degradation
ppec00190  Oxidative phosphorylation
ppec00220  Arginine biosynthesis
ppec00250  Alanine, aspartate and glutamate metabolism
ppec00280  Valine, leucine and isoleucine degradation
ppec00350  Tyrosine metabolism
ppec00470  D-Amino acid metabolism
ppec00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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