KEGG   PATHWAY: pper00020
Entry
pper00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Prunus persica (peach)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pper00020  Citrate cycle (TCA cycle)
pper00020

Module
pper_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pper00020]
pper_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pper00020]
pper_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pper00020]
Other DBs
GO: 0006099
Organism
Prunus persica (peach) [GN:pper]
Gene
18782404  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
18787309  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
18793697  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
18789553  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
18793384  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
18770920  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
18781917  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
18782217  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
18779564  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
18781889  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
18767236  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
18769077  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
18773383  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
18784973  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
18786835  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
18782593  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
18780785  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
18793393  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
18789271  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
18777180  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
18767888  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
18769030  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
18772657  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
18773504  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
18783993  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
18768919  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
18779761  malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
18788358  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
18768488  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18780643  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18777783  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
18773149  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18780671  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18775166  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
18771972  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
18790559  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
18784724  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
18789499  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
18779082  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
18788495  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
18791076  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
18767229  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
18782859  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
18785777  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pper00010  Glycolysis / Gluconeogenesis
pper00053  Ascorbate and aldarate metabolism
pper00061  Fatty acid biosynthesis
pper00062  Fatty acid elongation
pper00071  Fatty acid degradation
pper00190  Oxidative phosphorylation
pper00220  Arginine biosynthesis
pper00250  Alanine, aspartate and glutamate metabolism
pper00280  Valine, leucine and isoleucine degradation
pper00350  Tyrosine metabolism
pper00470  D-Amino acid metabolism
pper00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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