KEGG   PATHWAY: pper00940
Entry
pper00940                   Pathway                                
Name
Phenylpropanoid biosynthesis - Prunus persica (peach)
Description
Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.
Class
Metabolism; Biosynthesis of other secondary metabolites
Pathway map
pper00940  Phenylpropanoid biosynthesis
pper00940

Module
pper_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:pper00940]
pper_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:pper00940]
Other DBs
GO: 0009699
Organism
Prunus persica (peach) [GN:pper]
Gene
18772065  phenylalanine ammonia-lyase 1 [KO:K10775] [EC:4.3.1.24]
18784865  phenylalanine ammonia-lyase 1 [KO:K10775] [EC:4.3.1.24]
18791756  cytochrome P450 CYP73A100 [KO:K00487] [EC:1.14.14.91]
18772818  trans-cinnamate 4-monooxygenase [KO:K00487] [EC:1.14.14.91]
18775759  4-coumarate--CoA ligase-like 9 [KO:K01904] [EC:6.2.1.12]
18767376  LOW QUALITY PROTEIN: 4-coumarate--CoA ligase-like 6 [KO:K01904] [EC:6.2.1.12]
18781615  4-coumarate--CoA ligase 1 [KO:K01904] [EC:6.2.1.12]
18792923  4-coumarate--CoA ligase 2 [KO:K01904] [EC:6.2.1.12]
18772555  4-coumarate--CoA ligase-like 7 [KO:K01904] [EC:6.2.1.12]
18770881  4-coumarate--CoA ligase-like 7 [KO:K01904] [EC:6.2.1.12]
18769172  4-coumarate--CoA ligase-like 6 [KO:K01904] [EC:6.2.1.12]
18792004  4-coumarate--CoA ligase-like 1 [KO:K01904] [EC:6.2.1.12]
18786755  LOW QUALITY PROTEIN: 4-coumarate--CoA ligase 2 [KO:K01904] [EC:6.2.1.12]
18775963  4-coumarate--CoA ligase-like 9 [KO:K01904] [EC:6.2.1.12]
18791728  4-coumarate--CoA ligase-like 9 [KO:K01904] [EC:6.2.1.12]
18783095  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
18781919  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
18779361  spermidine hydroxycinnamoyl transferase [KO:K13065] [EC:2.3.1.133]
18781918  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
18783187  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
18782712  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
18782933  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
18784459  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
18772575  omega-hydroxypalmitate O-feruloyl transferase [KO:K13065] [EC:2.3.1.133]
109950432  vinorine synthase-like [KO:K13065] [EC:2.3.1.133]
109946874  vinorine synthase-like [KO:K13065] [EC:2.3.1.133]
109948912  vinorine synthase-like [KO:K13065] [EC:2.3.1.133]
18790787  vinorine synthase [KO:K13065] [EC:2.3.1.133]
109948145  vinorine synthase-like [KO:K13065] [EC:2.3.1.133]
109948832  BAHD acyltransferase At5g47980-like [KO:K13065] [EC:2.3.1.133]
18789708  cytochrome P450 98A2 [KO:K09754] [EC:1.14.14.96]
18792412  cytochrome P450 98A2 [KO:K09754] [EC:1.14.14.96]
18789709  cytochrome P450 98A2 [KO:K09754] [EC:1.14.14.96]
18789678  cytochrome P450 98A2 [KO:K09754] [EC:1.14.14.96]
18777009  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
18767467  caffeoylshikimate esterase isoform X2 [KO:K18368] [EC:3.1.1.-]
18785179  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
18790537  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
18781787  caffeoylshikimate esterase isoform X2 [KO:K18368] [EC:3.1.1.-]
18767560  caffeoyl-CoA O-methyltransferase 5 [KO:K00588] [EC:2.1.1.104]
18771033  probable caffeoyl-CoA O-methyltransferase At4g26220 [KO:K00588] [EC:2.1.1.104]
109946237  probable caffeoyl-CoA O-methyltransferase At4g26220 [KO:K00588] [EC:2.1.1.104]
18786011  flavonoid 3',5'-methyltransferase isoform X1 [KO:K00588] [EC:2.1.1.104]
18783603  cinnamoyl-CoA reductase 1 [KO:K09753] [EC:1.2.1.44]
18784457  cinnamoyl-CoA reductase 1 [KO:K09753] [EC:1.2.1.44]
18782836  cinnamoyl-CoA reductase 2 [KO:K09753] [EC:1.2.1.44]
18769769  aldehyde dehydrogenase family 2 member C4 [KO:K12355] [EC:1.2.1.68]
18768550  cytochrome P450 84A1 [KO:K09755] [EC:1.14.-.-]
18771703  cytochrome P450 84A1 [KO:K09755] [EC:1.14.-.-]
18786738  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
18776084  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
18787303  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
18786962  caffeic acid 3-O-methyltransferase isoform X1 [KO:K13066] [EC:2.1.1.68 2.1.1.4]
18786300  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
18790301  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
18784868  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
18777851  probable cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
18767368  probable cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
18767388  cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
18780288  probable mannitol dehydrogenase [KO:K00083] [EC:1.1.1.195]
18784198  probable cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
18790446  probable cinnamyl alcohol dehydrogenase 6 [KO:K00083] [EC:1.1.1.195]
18778395  berberine bridge enzyme-like 15 [KO:K22395] [EC:1.1.1.195]
18779389  berberine bridge enzyme-like 13 [KO:K22395] [EC:1.1.1.195]
18790191  1-Cys peroxiredoxin [KO:K11188] [EC:1.11.1.7 1.11.1.27 3.1.1.-]
18767441  peroxidase 10 [KO:K00430] [EC:1.11.1.7]
18767228  peroxidase 3 [KO:K00430] [EC:1.11.1.7]
18768241  peroxidase 12 [KO:K00430] [EC:1.11.1.7]
18778890  peroxidase 19 [KO:K00430] [EC:1.11.1.7]
18772528  peroxidase 17 [KO:K00430] [EC:1.11.1.7]
18772634  peroxidase 21 [KO:K00430] [EC:1.11.1.7]
18775501  peroxidase 60 [KO:K00430] [EC:1.11.1.7]
18780810  peroxidase 47 [KO:K00430] [EC:1.11.1.7]
18773443  peroxidase 73 [KO:K00430] [EC:1.11.1.7]
18775525  peroxidase 4 [KO:K00430] [EC:1.11.1.7]
18773006  peroxidase 4 [KO:K00430] [EC:1.11.1.7]
18774869  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
18772509  peroxidase 4 [KO:K00430] [EC:1.11.1.7]
18772631  peroxidase N [KO:K00430] [EC:1.11.1.7]
18782145  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
18782530  peroxidase 55 [KO:K00430] [EC:1.11.1.7]
18782936  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
18773098  peroxidase 5 [KO:K00430] [EC:1.11.1.7]
18779566  putative Peroxidase 48 [KO:K00430] [EC:1.11.1.7]
18771601  putative Peroxidase 48 [KO:K00430] [EC:1.11.1.7]
18773781  peroxidase 15 [KO:K00430] [EC:1.11.1.7]
18773398  peroxidase N [KO:K00430] [EC:1.11.1.7]
18773464  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
18773757  peroxidase 15 isoform X1 [KO:K00430] [EC:1.11.1.7]
18780772  peroxidase 7 [KO:K00430] [EC:1.11.1.7]
18776157  peroxidase 20 [KO:K00430] [EC:1.11.1.7]
18775243  peroxidase 17 [KO:K00430] [EC:1.11.1.7]
18774459  peroxidase 17 [KO:K00430] [EC:1.11.1.7]
18773331  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
18787098  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
18785759  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
18787352  peroxidase 66 [KO:K00430] [EC:1.11.1.7]
18784960  peroxidase 5 [KO:K00430] [EC:1.11.1.7]
18774150  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
18771351  peroxidase 72 [KO:K00430] [EC:1.11.1.7]
18781284  peroxidase 42 [KO:K00430] [EC:1.11.1.7]
18774584  peroxidase A2 [KO:K00430] [EC:1.11.1.7]
18771981  peroxidase A2 [KO:K00430] [EC:1.11.1.7]
18784375  peroxidase 3 [KO:K00430] [EC:1.11.1.7]
18782209  peroxidase 31 [KO:K00430] [EC:1.11.1.7]
18775415  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
18771961  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
18775965  peroxidase 41 [KO:K00430] [EC:1.11.1.7]
18776335  peroxidase 41 [KO:K00430] [EC:1.11.1.7]
18769960  peroxidase A2 [KO:K00430] [EC:1.11.1.7]
18769190  peroxidase 10 [KO:K00430] [EC:1.11.1.7]
18769477  peroxidase 25 [KO:K00430] [EC:1.11.1.7]
18771476  peroxidase 64 [KO:K00430] [EC:1.11.1.7]
18778832  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
18786174  peroxidase 4 [KO:K00430] [EC:1.11.1.7]
18793843  peroxidase 5 [KO:K00430] [EC:1.11.1.7]
18779847  peroxidase 7 [KO:K00430] [EC:1.11.1.7]
18774491  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
18788700  peroxidase 11 [KO:K00430] [EC:1.11.1.7]
18790974  peroxidase 24 [KO:K00430] [EC:1.11.1.7]
18793513  peroxidase 5 [KO:K00430] [EC:1.11.1.7]
18792573  lignin-forming anionic peroxidase [KO:K00430] [EC:1.11.1.7]
18789516  peroxidase 41 [KO:K00430] [EC:1.11.1.7]
18791044  probable peroxidase 26 [KO:K00430] [EC:1.11.1.7]
18790823  peroxidase 16 [KO:K00430] [EC:1.11.1.7]
18791564  peroxidase 40 [KO:K00430] [EC:1.11.1.7]
18792576  peroxidase 5 [KO:K00430] [EC:1.11.1.7]
18790724  peroxidase 18 [KO:K00430] [EC:1.11.1.7]
18789526  peroxidase 9 [KO:K00430] [EC:1.11.1.7]
18770065  peroxidase 44 [KO:K00430] [EC:1.11.1.7]
18793780  peroxidase 16 [KO:K00430] [EC:1.11.1.7]
18792772  peroxidase 29 [KO:K00430] [EC:1.11.1.7]
18793937  peroxidase 43 [KO:K00430] [EC:1.11.1.7]
18769331  anthocyanidin 3-O-glucosyltransferase 5 [KO:K12356] [EC:2.4.1.111]
18770907  anthocyanidin 3-O-glucosyltransferase 5 [KO:K12356] [EC:2.4.1.111]
Compound
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00223  p-Coumaroyl-CoA
C00315  Spermidine
C00323  Caffeoyl-CoA
C00406  Feruloyl-CoA
C00411  Sinapoyl-CoA
C00423  trans-Cinnamate
C00482  Sinapate
C00540  Cinnamoyl-CoA
C00590  Coniferyl alcohol
C00761  Coniferin
C00811  4-Coumarate
C00852  Chlorogenate
C00903  Cinnamaldehyde
C00933  Sinapine
C01175  1-O-Sinapoyl-beta-D-glucose
C01197  Caffeate
C01494  Ferulate
C01533  Syringin
C02325  Sinapyl alcohol
C02646  4-Coumaryl alcohol
C02666  Coniferyl aldehyde
C02887  Sinapoyl malate
C02947  4-Coumaroylshikimate
C04366  3-(2-Carboxyethenyl)-cis,cis-muconate
C05608  4-Hydroxycinnamyl aldehyde
C05610  Sinapoyl aldehyde
C05619  5-Hydroxyferulic acid
C05627  4-Hydroxystyrene
C05855  4-Hydroxycinnamyl alcohol 4-D-glucoside
C06224  3,4-Dihydroxystyrene
C10428  Anethole
C10434  5-O-Caffeoylshikimic acid
C10452  Estragole
C10453  Eugenol
C10454  Methyleugenol
C10469  Isoeugenol
C10478  Methylisoeugenol
C10945  Caffeic aldehyde
C12203  5-Hydroxyferuloyl-CoA
C12204  5-Hydroxyconiferaldehyde
C12205  5-Hydroxyconiferyl alcohol
C12206  Caffeyl alcohol
C12208  p-Coumaroyl quinic acid
C15804  p-Hydroxyphenyl lignin
C15805  Guaiacyl lignin
C15806  Syringyl lignin
C15807  5-Hydroxy-guaiacyl lignin
C16930  Chavicol
C18069  N1,N5,N10-Tricoumaroyl spermidine
C18070  N1,N5,N10-Tricaffeoyl spermidine
C18071  N1,N5,N10-Triferuloyl spermidine
C18072  N1,N5,N10-Tri(hydroxyferuloyl) spermidine
C18073  N1,N5-Di(hydroxyferuloyl)-N10-sinapoyl spermidine
C20225  Coniferyl acetate
C20464  Isochavicol
C20465  Coumaryl acetate
Reference
  Authors
Nair RB, Bastress KL, Ruegger MO, Denault JW, Chapple C.
  Title
The Arabidopsis thaliana REDUCED EPIDERMAL FLUORESCENCE1 gene encodes an aldehyde dehydrogenase involved in ferulic acid and sinapic acid biosynthesis.
  Journal
Plant Cell 16:544-54 (2004)
DOI:10.1105/tpc.017509
Reference
  Authors
Baucher M, Halpin C, Petit-Conil M, Boerjan W.
  Title
Lignin: genetic engineering and impact on pulping.
  Journal
Crit Rev Biochem Mol Biol 38:305-50 (2003)
DOI:10.1080/10409230391036757
Reference
  Authors
Rogers LA, Dubos C, Cullis IF, Surman C, Poole M, Willment J, Mansfield SD, Campbell MM.
  Title
Light, the circadian clock, and sugar perception in the control of lignin biosynthesis.
  Journal
J Exp Bot 56:1651-63 (2005)
DOI:10.1093/jxb/eri162
Reference
  Authors
Whetten R, Sederoff R.
  Title
Lignin Biosynthesis.
  Journal
Plant Cell 7:1001-1013 (1995)
DOI:10.1105/tpc.7.7.1001
Reference
PMID:8972602
  Authors
Lorenzen M, Racicot V, Strack D, Chapple C.
  Title
Sinapic acid ester metabolism in wild type and a sinapoylglucose-accumulating mutant of arabidopsis.
  Journal
Plant Physiol 112:1625-30 (1996)
DOI:10.1104/pp.112.4.1625
Reference
PMID:1477555
  Authors
Chapple CC, Vogt T, Ellis BE, Somerville CR.
  Title
An Arabidopsis mutant defective in the general phenylpropanoid pathway.
  Journal
Plant Cell 4:1413-24 (1992)
DOI:10.1105/tpc.4.11.1413
Reference
  Authors
Raes J, Rohde A, Christensen JH, Van de Peer Y, Boerjan W.
  Title
Genome-wide characterization of the lignification toolbox in Arabidopsis.
  Journal
Plant Physiol 133:1051-71 (2003)
DOI:10.1104/pp.103.026484
Reference
  Authors
Costa MA, Collins RE, Anterola AM, Cochrane FC, Davin LB, Lewis NG.
  Title
An in silico assessment of gene function and organization of the phenylpropanoid pathway metabolic networks in Arabidopsis thaliana and limitations thereof.
  Journal
Phytochemistry 64:1097-112 (2003)
DOI:10.1016/S0031-9422(03)00517-X
Reference
  Authors
Meyermans H, Morreel K, Lapierre C, Pollet B, De Bruyn A, Busson R, Herdewijn P, Devreese B, Van Beeumen J, Marita JM, Ralph J, Chen C, Burggraeve B, Van Montagu M, Messens E, Boerjan W.
  Title
Modifications in lignin and accumulation of phenolic glucosides in poplar xylem upon down-regulation of caffeoyl-coenzyme A O-methyltransferase, an enzyme involved in lignin biosynthesis.
  Journal
J Biol Chem 275:36899-909 (2000)
DOI:10.1074/jbc.M006915200
Reference
  Authors
Gachon CM, Langlois-Meurinne M, Henry Y, Saindrenan P.
  Title
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications.
  Journal
Plant Mol Biol 58:229-45 (2005)
DOI:10.1007/s11103-005-5346-5
Reference
  Authors
Li L, Popko JL, Umezawa T, Chiang VL.
  Title
5-hydroxyconiferyl aldehyde modulates enzymatic methylation for syringyl monolignol formation, a new view of monolignol biosynthesis in angiosperms.
  Journal
J Biol Chem 275:6537-45 (2000)
DOI:10.1074/jbc.275.9.6537
Reference
  Authors
Yamauchi K, Yasuda S, Fukushima K.
  Title
Evidence for the biosynthetic pathway from sinapic acid to syringyl lignin using labeled sinapic acid with stable isotope at both methoxy groups in Robinia pseudoacacia and Nerium indicum.
  Journal
J Agric Food Chem 50:3222-7 (2002)
DOI:10.1021/jf011565x
Reference
  Authors
Eckardt NA.
  Title
Probing the mysteries of lignin biosynthesis: the crystal structure of caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase provides new insights.
  Journal
Plant Cell 14:1185-9 (2002)
DOI:10.1105/tpc.140610
Related
pathway
pper00130  Ubiquinone and other terpenoid-quinone biosynthesis
pper00400  Phenylalanine, tyrosine and tryptophan biosynthesis
pper00941  Flavonoid biosynthesis
pper00945  Stilbenoid, diarylheptanoid and gingerol biosynthesis
KO pathway
ko00940   
LinkDB

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