KEGG   PATHWAY: ppoi00020
Entry
ppoi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pollicipes pollicipes (gooseneck barnacle)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppoi00020  Citrate cycle (TCA cycle)
ppoi00020

Module
ppoi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppoi00020]
ppoi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppoi00020]
ppoi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppoi00020]
Other DBs
GO: 0006099
Organism
Pollicipes pollicipes (gooseneck barnacle) [GN:ppoi]
Gene
119105769  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
119105829  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
119096431  LOW QUALITY PROTEIN: ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
119089370  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
119111913  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
119113732  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
119108486  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
119099900  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
119110576  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
119112294  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
119103710  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
119112999  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
119103919  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
119103343  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
119104453  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
119110180  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
119093247  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
119089734  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
119104342  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
119097466  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119107900  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119100959  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
119101088  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
119096229  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
119093988  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like isoform X1 [KO:K00237]
119109444  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
119099970  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
119100714  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
119100716  LOW QUALITY PROTEIN: malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
119110232  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
119107244  pyruvate carboxylase, mitochondrial-like isoform X1 [KO:K01958] [EC:6.4.1.1]
119108265  LOW QUALITY PROTEIN: pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
119108271  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
119099761  phosphoenolpyruvate carboxykinase [GTP], mitochondrial-like [KO:K01596] [EC:4.1.1.32]
119090891  phosphoenolpyruvate carboxykinase [GTP], mitochondrial-like [KO:K01596] [EC:4.1.1.32]
119101136  phosphoenolpyruvate carboxykinase [GTP], mitochondrial-like [KO:K01596] [EC:4.1.1.32]
119107366  pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
119103526  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
119110877  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
119110883  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
119091854  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppoi00010  Glycolysis / Gluconeogenesis
ppoi00053  Ascorbate and aldarate metabolism
ppoi00061  Fatty acid biosynthesis
ppoi00062  Fatty acid elongation
ppoi00071  Fatty acid degradation
ppoi00190  Oxidative phosphorylation
ppoi00220  Arginine biosynthesis
ppoi00250  Alanine, aspartate and glutamate metabolism
ppoi00280  Valine, leucine and isoleucine degradation
ppoi00350  Tyrosine metabolism
ppoi00470  D-Amino acid metabolism
ppoi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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