KEGG   PATHWAY: ppon00020
Entry
ppon00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Psychroserpens ponticola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppon00020  Citrate cycle (TCA cycle)
ppon00020

Module
ppon_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppon00020]
ppon_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppon00020]
ppon_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppon00020]
ppon_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppon00020]
ppon_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppon00020]
Other DBs
GO: 0006099
Organism
Psychroserpens ponticola [GN:ppon]
Gene
MUN68_002530  citrate synthase [KO:K01647] [EC:2.3.3.1]
MUN68_004565  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MUN68_004825  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MUN68_000240  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MUN68_000235  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MUN68_001595  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
MUN68_012830  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
MUN68_005950  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUN68_010255  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUN68_006410  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MUN68_004385  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MUN68_017425  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MUN68_017420  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MUN68_017430  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MUN68_007370  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MUN68_002750  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MUN68_010000  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
MUN68_004950  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MUN68_015170  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MUN68_013140  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MUN68_001175  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MUN68_013135  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppon00010  Glycolysis / Gluconeogenesis
ppon00053  Ascorbate and aldarate metabolism
ppon00061  Fatty acid biosynthesis
ppon00071  Fatty acid degradation
ppon00190  Oxidative phosphorylation
ppon00220  Arginine biosynthesis
ppon00250  Alanine, aspartate and glutamate metabolism
ppon00280  Valine, leucine and isoleucine degradation
ppon00350  Tyrosine metabolism
ppon00470  D-Amino acid metabolism
ppon00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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