KEGG   PATHWAY: pprm00020
Entry
pprm00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pimephales promelas (fathead minnow)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pprm00020  Citrate cycle (TCA cycle)
pprm00020

Module
pprm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pprm00020]
pprm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pprm00020]
pprm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pprm00020]
pprm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pprm00020]
pprm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pprm00020]
Other DBs
GO: 0006099
Organism
Pimephales promelas (fathead minnow) [GN:pprm]
Gene
120463290  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
120489691  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
120488705  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
120477386  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
120488756  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
120486528  idh1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
120487637  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
120490745  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
120460190  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
120463256  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
120474861  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
120482239  ogdhb; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
120479612  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
120462433  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
120460372  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
120491450  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
120491680  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120480302  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120483610  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
120486475  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
120462917  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
120495458  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
120478919  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
120462690  fh; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
120464434  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
120489787  mdh1aa; malate dehydrogenase 1Aa, NAD (soluble) isoform X1 [KO:K00025] [EC:1.1.1.37]
120482849  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
120477636  pcxb; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
120494698  pcxa; pyruvate carboxylase a [KO:K01958] [EC:6.4.1.1]
120464821  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
120475893  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
120469293  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a isoform X1 [KO:K00161] [EC:1.2.4.1]
120488342  pdha1b; pyruvate dehydrogenase E1 subunit alpha 1b isoform X1 [KO:K00161] [EC:1.2.4.1]
120492953  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
120494474  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
120494514  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pprm00010  Glycolysis / Gluconeogenesis
pprm00053  Ascorbate and aldarate metabolism
pprm00061  Fatty acid biosynthesis
pprm00062  Fatty acid elongation
pprm00071  Fatty acid degradation
pprm00190  Oxidative phosphorylation
pprm00220  Arginine biosynthesis
pprm00250  Alanine, aspartate and glutamate metabolism
pprm00280  Valine, leucine and isoleucine degradation
pprm00350  Tyrosine metabolism
pprm00470  D-Amino acid metabolism
pprm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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