KEGG   PATHWAY: prap04137
Entry
prap04137                   Pathway                                
Name
Mitophagy - animal - Pieris rapae (cabbage white)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
prap04137  Mitophagy - animal
prap04137

Other DBs
GO: 0000422
Organism
Pieris rapae (cabbage white) [GN:prap]
Gene
111000340  uncharacterized protein LOC111000340 isoform X1 [KO:K17985]
111003863  mitochondrial import receptor subunit TOM40 homolog 1 [KO:K11518]
111001165  mitochondrial import receptor subunit TOM40 homolog 1 [KO:K11518]
110996128  uncharacterized protein LOC110996128 [KO:K11518]
110997767  mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
111002727  mitochondrial import receptor subunit TOM70 [KO:K17768]
110997246  E3 ubiquitin-protein ligase MARCHF5 [KO:K10660] [EC:2.3.2.27]
111002814  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
110994773  E3 ubiquitin-protein ligase AMFR [KO:K10636] [EC:2.3.2.36]
111002147  mitochondrial E3 ubiquitin protein ligase 1 [KO:K15688] [EC:2.3.2.27]
110999529  E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
111000209  E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
110993275  uncharacterized protein LOC110993275 [KO:K04506] [EC:2.3.2.27]
111003027  E3 ubiquitin-protein ligase siah2 [KO:K04506] [EC:2.3.2.27]
111003626  E3 ubiquitin-protein ligase ariadne-1 isoform X1 [KO:K11968] [EC:2.3.2.31]
111000195  transmembrane GTPase Marf [KO:K06030] [EC:3.6.5.-]
110992726  mitochondrial Rho GTPase isoform X3 [KO:K07870] [EC:3.6.5.-]
110998737  ubiquitin-60S ribosomal protein L40 [KO:K02927]
110999767  ubiquitin-40S ribosomal protein S27a [KO:K02977]
111003629  polyubiquitin-C [KO:K08770]
123689177  LOW QUALITY PROTEIN: polyubiquitin-like [KO:K08770]
110994780  sequestosome-1 isoform X1 [KO:K14381]
110994808  serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
110992141  gamma-aminobutyric acid receptor-associated protein [KO:K08341]
110993027  uncharacterized protein LOC110993027 isoform X1 [KO:K10435]
110997779  beclin-1-like protein [KO:K08334]
111001885  ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
110997141  ubiquitin carboxyl-terminal hydrolase 30 homolog [KO:K11851] [EC:3.4.19.12]
110993161  serine/threonine-protein phosphatase Pgam5, mitochondrial isoform X1 [KO:K15637] [EC:3.1.3.16]
111004043  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
111000668  casein kinase II subunit beta-like isoform X1 [KO:K03115]
111000683  casein kinase II subunit beta [KO:K03115]
111003061  tyrosine-protein kinase Src64B isoform X1 [KO:K05704] [EC:2.7.10.2]
111003271  FUN14 domain-containing protein 1 [KO:K17986]
110992545  BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 isoform X1 [KO:K15464]
110995756  peptidyl-prolyl cis-trans isomerase FKBP8 [KO:K09574] [EC:5.2.1.8]
110996187  sorting and assembly machinery component 50 homolog A [KO:K07277]
110997791  prohibitin-2 [KO:K17081]
110994985  prohibitin-2-like [KO:K17081]
111003591  metaxin-1 isoform X1 [KO:K17776]
110993046  eukaryotic translation initiation factor 2-alpha kinase isoform X1 [KO:K08860] [EC:2.7.11.1]
111000644  eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
111003028  activating transcription factor of chaperone [KO:K04374]
110999109  stress-activated protein kinase JNK isoform X1 [KO:K04440] [EC:2.7.11.24]
110996297  transcription factor jun-D [KO:K04448]
111003241  GTPase HRas [KO:K07827]
110997177  ras-related protein M-Ras isoform X2 [KO:K07831]
110998611  ras-like protein 2 isoform X1 [KO:K07830]
110994150  hypoxia-inducible factor 1-alpha isoform X1 [KO:K08268]
111004181  forkhead box protein O isoform X1 [KO:K09408]
111004302  transcription factor EB isoform X1 [KO:K09105]
111000206  rab5 GDP/GTP exchange factor isoform X1 [KO:K20131]
110991271  ras-related protein Rab-5B isoform X1 [KO:K07888]
110993601  protein SAND [KO:K20195]
110998486  uncharacterized protein PB18E9.04c isoform X2 [KO:K20195]
110992331  vacuolar fusion protein CCZ1 homolog isoform X1 [KO:K27045]
110993745  ras-related protein Rab-7a [KO:K07897]
110999233  TBC1 domain family member 15 isoform X1 [KO:K20168]
110997816  mitochondrial fission 1 protein [KO:K17969]
110997371  autophagy-related protein 9A [KO:K17907]
110994964  dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
110994468  transitional endoplasmic reticulum ATPase TER94 [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
prap04140  Autophagy - animal
KO pathway
ko04137   
LinkDB

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