KEGG   PATHWAY: prp00020
Entry
prp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas aeruginosa RP73
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
prp00020  Citrate cycle (TCA cycle)
prp00020

Module
prp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:prp00020]
prp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:prp00020]
prp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:prp00020]
prp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:prp00020]
prp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:prp00020]
Other DBs
GO: 0006099
Organism
Pseudomonas aeruginosa RP73 [GN:prp]
Gene
M062_08435  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
M062_08340  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
M062_09315  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
M062_13935  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M062_13940  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M062_08460  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
M062_08465  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
M062_11770  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M062_08470  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M062_25490  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M062_08480  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
M062_08475  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M062_28690  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
M062_08450  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M062_08455  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M062_08440  succinate dehydrogenase subunit C [KO:K00241]
M062_08445  succinate dehydrogenase [KO:K00242]
M062_22840  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
M062_04155  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M062_23535  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M062_24440  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
M062_18415  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
M062_28635  acetyl-CoA carboxylase subunit alpha [KO:K01959] [EC:6.4.1.1]
M062_28630  pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
M062_27380  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
M062_26435  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
M062_21890  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
M062_26440  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
prp00010  Glycolysis / Gluconeogenesis
prp00053  Ascorbate and aldarate metabolism
prp00061  Fatty acid biosynthesis
prp00071  Fatty acid degradation
prp00190  Oxidative phosphorylation
prp00220  Arginine biosynthesis
prp00250  Alanine, aspartate and glutamate metabolism
prp00280  Valine, leucine and isoleucine degradation
prp00350  Tyrosine metabolism
prp00470  D-Amino acid metabolism
prp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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