KEGG   PATHWAY: psan00020
Entry
psan00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paracoccus sanguinis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psan00020  Citrate cycle (TCA cycle)
psan00020

Module
psan_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psan00020]
psan_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psan00020]
psan_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psan00020]
psan_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psan00020]
psan_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psan00020]
Other DBs
GO: 0006099
Organism
Paracoccus sanguinis [GN:psan]
Gene
HGN31_01980  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HGN31_00400  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HGN31_07560  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HGN31_04140  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HGN31_04145  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HGN31_15985  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HGN31_04170  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HGN31_13335  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HGN31_04130  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HGN31_04120  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HGN31_04055  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HGN31_04030  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HGN31_04065  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HGN31_04060  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HGN31_03585  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HGN31_04110  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HGN31_04455  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HGN31_03875  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HGN31_12130  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HGN31_12125  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HGN31_15980  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
HGN31_12120  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psan00010  Glycolysis / Gluconeogenesis
psan00053  Ascorbate and aldarate metabolism
psan00061  Fatty acid biosynthesis
psan00071  Fatty acid degradation
psan00190  Oxidative phosphorylation
psan00220  Arginine biosynthesis
psan00250  Alanine, aspartate and glutamate metabolism
psan00280  Valine, leucine and isoleucine degradation
psan00350  Tyrosine metabolism
psan00470  D-Amino acid metabolism
psan00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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