KEGG   PATHWAY: psat00020
Entry
psat00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pisum sativum (pea)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psat00020  Citrate cycle (TCA cycle)
psat00020

Module
psat_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psat00020]
psat_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psat00020]
psat_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psat00020]
psat_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psat00020]
psat_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psat00020]
Other DBs
GO: 0006099
Organism
Pisum sativum (pea) [GN:psat]
Gene
127134556  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
127084992  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
127119289  ATP-citrate synthase alpha chain protein 1 isoform X1 [KO:K01648] [EC:2.3.3.8]
127074180  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
127136380  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
127086740  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
127120097  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
127101208  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
127103003  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
127103004  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
127137937  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
127118344  isocitrate dehydrogenase [NADP], chloroplastic [KO:K00031] [EC:1.1.1.42]
127119283  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
127135177  isocitrate dehydrogenase [NADP], chloroplastic-like [KO:K00031] [EC:1.1.1.42]
127088164  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
127092528  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
127120037  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
127074766  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
127098084  uncharacterized protein LOC127098084 [KO:K00164] [EC:1.2.4.2]
127128282  uncharacterized protein LOC127128282 [KO:K00164] [EC:1.2.4.2]
127117669  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
127138802  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
127073212  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
127073884  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
127132623  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
127098671  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127074554  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
127120258  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
127128045  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
127100867  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
127083575  uncharacterized protein LOC127083575 [KO:K25801]
127091904  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
127096802  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
127076770  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
127098197  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
127108367  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
127119190  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
127120517  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
127075368  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
127073794  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
127119724  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
127135431  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
127119441  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
127075154  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
127076148  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
127132066  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
127100675  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
127128483  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
127091222  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
127076329  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
127097869  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
127098592  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psat00010  Glycolysis / Gluconeogenesis
psat00053  Ascorbate and aldarate metabolism
psat00061  Fatty acid biosynthesis
psat00062  Fatty acid elongation
psat00071  Fatty acid degradation
psat00190  Oxidative phosphorylation
psat00220  Arginine biosynthesis
psat00250  Alanine, aspartate and glutamate metabolism
psat00280  Valine, leucine and isoleucine degradation
psat00350  Tyrosine metabolism
psat00470  D-Amino acid metabolism
psat00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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