KEGG   PATHWAY: psej00020
Entry
psej00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas sediminis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psej00020  Citrate cycle (TCA cycle)
psej00020

Module
psej_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psej00020]
psej_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psej00020]
psej_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psej00020]
psej_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psej00020]
psej_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psej00020]
Other DBs
GO: 0006099
Organism
Pseudomonas sediminis [GN:psej]
Gene
HNQ25_12205  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HNQ25_11050  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HNQ25_14040  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HNQ25_13475  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HNQ25_13480  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HNQ25_12230  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HNQ25_12235  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HNQ25_12240  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HNQ25_18965  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HNQ25_12250  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HNQ25_12245  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HNQ25_12220  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HNQ25_12225  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HNQ25_12210  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HNQ25_12215  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HNQ25_08355  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HNQ25_15830  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HNQ25_06335  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HNQ25_09300  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HNQ25_02200  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
HNQ25_02205  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
HNQ25_22530  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HNQ25_21475  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HNQ25_21480  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psej00010  Glycolysis / Gluconeogenesis
psej00053  Ascorbate and aldarate metabolism
psej00061  Fatty acid biosynthesis
psej00071  Fatty acid degradation
psej00190  Oxidative phosphorylation
psej00220  Arginine biosynthesis
psej00250  Alanine, aspartate and glutamate metabolism
psej00280  Valine, leucine and isoleucine degradation
psej00350  Tyrosine metabolism
psej00470  D-Amino acid metabolism
psej00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system