KEGG   PATHWAY: pseq00630
Entry
pseq00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudonocardia sp. EC080610-09
Class
Metabolism; Carbohydrate metabolism
Pathway map
pseq00630  Glyoxylate and dicarboxylate metabolism
pseq00630

Module
pseq_M00012  Glyoxylate cycle [PATH:pseq00630]
pseq_M00621  Glycine cleavage system [PATH:pseq00630]
pseq_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pseq00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudonocardia sp. EC080610-09 [GN:pseq]
Gene
AD006_08160  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
AD006_00380  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AD006_15455  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AD006_03595  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AD006_14645  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
AD006_26490  malate synthase [KO:K01638] [EC:2.3.3.9]
AD006_22805  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AD006_19620  hypothetical protein [KO:K01647] [EC:2.3.3.1]
AD006_02690  hypothetical protein [KO:K01647] [EC:2.3.3.1]
AD006_02705  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
AD006_08165  citrate synthase [KO:K01647] [EC:2.3.3.1]
AD006_08190  citrate synthase [KO:K01647] [EC:2.3.3.1]
AD006_27380  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AD006_17255  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AD006_01645  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD006_11105  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD006_06850  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD006_02570  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD006_07070  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD006_31840  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD006_31865  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD006_04925  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD006_31950  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD006_32025  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD006_27400  3-oxoacyl-ACP synthase [KO:K00023] [EC:1.1.1.36]
AD006_00355  dehydratase [KO:K17865] [EC:4.2.1.55]
AD006_11100  glyoxalase [KO:K05606] [EC:5.1.99.1]
AD006_10970  protein meaA [KO:K14447] [EC:5.4.99.63]
AD006_00340  acetyl-COA carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
AD006_10090  acetyl-COA carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
AD006_10150  methylmalonyl-CoA carboxyltransferase [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
AD006_10145  acetyl-CoA carboxylase [KO:K27095]
AD006_20180  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
AD006_20185  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
AD006_29835  FAD-linked oxidase [KO:K00104] [EC:1.1.99.14]
AD006_26495  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
AD006_26750  FAD-linked oxidase [KO:K00104] [EC:1.1.99.14]
AD006_26500  dehydrogenase [KO:K11472] [EC:1.1.99.14]
AD006_26505  glycolate oxidase [KO:K11473] [EC:1.1.99.14]
AD006_03815  catalase [KO:K03781] [EC:1.11.1.6]
AD006_14750  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
AD006_11025  rbcL; ribulose 1,5-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
AD006_11020  ribulose 1,5-bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
AD006_27135  hypothetical protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
AD006_14580  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
AD006_23415  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AD006_23465  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AD006_10890  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AD006_27730  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AD006_19970  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
AD006_14930  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AD006_18760  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AD006_14900  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AD006_19995  hypothetical protein [KO:K02437]
AD006_17350  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
AD006_17360  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
AD006_17355  tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
AD006_17345  glycerate kinase [KO:K00865] [EC:2.7.1.165]
AD006_14955  hypothetical protein [KO:K00865] [EC:2.7.1.165]
AD006_02360  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
AD006_20425  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AD006_17395  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AD006_10685  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AD006_30895  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
AD006_12950  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AD006_12955  dehydrogenase [KO:K00123] [EC:1.17.1.9]
AD006_12945  ferredoxin [KO:K00124]
AD006_02805  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AD006_27685  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AD006_21965  formamidase [KO:K01455] [EC:3.5.1.49]
AD006_05395  formamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pseq00010  Glycolysis / Gluconeogenesis
pseq00020  Citrate cycle (TCA cycle)
pseq00030  Pentose phosphate pathway
pseq00053  Ascorbate and aldarate metabolism
pseq00071  Fatty acid degradation
pseq00230  Purine metabolism
pseq00250  Alanine, aspartate and glutamate metabolism
pseq00260  Glycine, serine and threonine metabolism
pseq00620  Pyruvate metabolism
pseq00710  Carbon fixation by Calvin cycle
pseq00750  Vitamin B6 metabolism
pseq00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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