KEGG   PATHWAY: pshq00020
Entry
pshq00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudooceanicola spongiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pshq00020  Citrate cycle (TCA cycle)
pshq00020

Module
pshq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pshq00020]
pshq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pshq00020]
pshq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pshq00020]
pshq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pshq00020]
pshq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pshq00020]
Other DBs
GO: 0006099
Organism
Pseudooceanicola spongiae [GN:pshq]
Gene
F3W81_00035  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
F3W81_02890  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
F3W81_02120  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F3W81_04920  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
F3W81_18975  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
F3W81_20245  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
F3W81_20240  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
F3W81_02700  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F3W81_20220  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F3W81_20255  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
F3W81_20260  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
F3W81_20305  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F3W81_20310  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
F3W81_20295  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
F3W81_20300  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
F3W81_18755  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
F3W81_03315  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
F3W81_20265  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F3W81_07710  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
F3W81_12640  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
F3W81_02565  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
F3W81_02560  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
F3W81_02555  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pshq00010  Glycolysis / Gluconeogenesis
pshq00053  Ascorbate and aldarate metabolism
pshq00061  Fatty acid biosynthesis
pshq00071  Fatty acid degradation
pshq00190  Oxidative phosphorylation
pshq00220  Arginine biosynthesis
pshq00250  Alanine, aspartate and glutamate metabolism
pshq00280  Valine, leucine and isoleucine degradation
pshq00350  Tyrosine metabolism
pshq00470  D-Amino acid metabolism
pshq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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