KEGG   PATHWAY: psic00020
Entry
psic00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pengzhenrongella sicca
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psic00020  Citrate cycle (TCA cycle)
psic00020

Module
psic_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psic00020]
psic_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psic00020]
psic_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psic00020]
psic_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psic00020]
Other DBs
GO: 0006099
Organism
Pengzhenrongella sicca [GN:psic]
Gene
J4E96_15990  citrate synthase [KO:K01647] [EC:2.3.3.1]
J4E96_16305  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
J4E96_13185  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
J4E96_02840  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J4E96_04705  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
J4E96_13550  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J4E96_02800  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
J4E96_02795  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J4E96_15905  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J4E96_15910  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J4E96_15895  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
J4E96_15900  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
J4E96_07790  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
J4E96_07795  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
J4E96_07800  hypothetical protein [KO:K00246]
J4E96_07805  hypothetical protein [KO:K00247]
J4E96_07785  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J4E96_16180  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J4E96_02845  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J4E96_08380  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J4E96_10475  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
J4E96_00775  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
J4E96_13795  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
J4E96_13555  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psic00010  Glycolysis / Gluconeogenesis
psic00053  Ascorbate and aldarate metabolism
psic00061  Fatty acid biosynthesis
psic00071  Fatty acid degradation
psic00190  Oxidative phosphorylation
psic00220  Arginine biosynthesis
psic00250  Alanine, aspartate and glutamate metabolism
psic00280  Valine, leucine and isoleucine degradation
psic00350  Tyrosine metabolism
psic00470  D-Amino acid metabolism
psic00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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