KEGG   PATHWAY: psjy00630
Entry
psjy00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas sp. JY-Q
Class
Metabolism; Carbohydrate metabolism
Pathway map
psjy00630  Glyoxylate and dicarboxylate metabolism
psjy00630

Module
psjy_M00012  Glyoxylate cycle [PATH:psjy00630]
psjy_M00621  Glycine cleavage system [PATH:psjy00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas sp. JY-Q [GN:psjy]
Gene
AA098_18770  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
AA098_20230  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AA098_04350  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AA098_09545  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
AA098_25800  malate synthase [KO:K01638] [EC:2.3.3.9]
AA098_24115  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AA098_19220  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AA098_09015  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AA098_10060  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AA098_24500  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AA098_04720  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AA098_09555  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AA098_17285  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AA098_17240  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
AA098_17245  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
AA098_17250  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
AA098_25030  catalase [KO:K03781] [EC:1.11.1.6]
AA098_27090  katE; hydroperoxidase [KO:K03781] [EC:1.11.1.6]
AA098_12520  catalase [KO:K03781] [EC:1.11.1.6]
AA098_17975  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AA098_04900  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AA098_23625  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
AA098_14935  2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
AA098_25505  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
AA098_27215  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AA098_08250  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AA098_20055  glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
AA098_20530  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AA098_00485  gamma-glutamylputrescine synthetase [KO:K01915] [EC:6.3.1.2]
AA098_01055  gamma-glutamylputrescine synthetase [KO:K01915] [EC:6.3.1.2]
AA098_01065  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AA098_01740  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AA098_09370  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AA098_13695  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AA098_17865  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AA098_24090  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AA098_25980  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AA098_22490  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
AA098_01015  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
AA098_22500  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AA098_01005  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AA098_19185  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AA098_20080  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AA098_00150  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AA098_22485  glycine cleavage system protein H [KO:K02437]
AA098_01010  glycine cleavage system protein H [KO:K02437]
AA098_13845  glycerate kinase [KO:K00865] [EC:2.7.1.165]
AA098_09335  tartrate dehydratase [KO:K03779] [EC:4.2.1.32]
AA098_09330  fumarate hydrolyase [KO:K03780] [EC:4.2.1.32]
AA098_22305  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AA098_09410  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
AA098_24985  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AA098_09405  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AA098_24980  formate dehydrogenase [KO:K00124]
AA098_09400  formate dehydrogenase [KO:K00124]
AA098_24975  formate dehydrogenase [KO:K00127]
AA098_09395  formate dehydrogenase [KO:K00127]
AA098_25955  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AA098_05405  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AA098_17875  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AA098_01820  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
psjy00010  Glycolysis / Gluconeogenesis
psjy00020  Citrate cycle (TCA cycle)
psjy00030  Pentose phosphate pathway
psjy00053  Ascorbate and aldarate metabolism
psjy00071  Fatty acid degradation
psjy00230  Purine metabolism
psjy00250  Alanine, aspartate and glutamate metabolism
psjy00260  Glycine, serine and threonine metabolism
psjy00620  Pyruvate metabolism
psjy00710  Carbon fixation by Calvin cycle
psjy00750  Vitamin B6 metabolism
psjy00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system