KEGG   PATHWAY: psos03018
Entry
psos03018                   Pathway                                
Name
RNA degradation - Pseudomonas sp. Os17
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
psos03018  RNA degradation
psos03018

Other DBs
GO: 0006401
Organism
Pseudomonas sp. Os17 [GN:psos]
Gene
POS17_5844  rppH; RNA pyrophosphohydrolase [KO:K08311] [EC:3.6.1.-]
POS17_1801  rne; ribonuclease E [KO:K08300] [EC:3.1.26.12]
POS17_1043  ATP-dependent RNA helicase RhlB [KO:K03732] [EC:5.6.2.7]
POS17_1201  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
POS17_0848  pnp; polynucleotide phosphorylase [KO:K00962] [EC:2.7.7.8]
POS17_5737  rhlE_2; ATP-dependent RNA helicase [KO:K11927] [EC:5.6.2.7]
POS17_5363  rhlE_1; ATP-dependent RNA helicase [KO:K11927] [EC:5.6.2.7]
POS17_0569  ribonuclease R [KO:K12573] [EC:3.1.13.1]
POS17_4327  DEAD-box ATP dependent DNA helicase [KO:K05592] [EC:5.6.2.7]
POS17_0296  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
POS17_1598  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
POS17_5926  rho; transcription termination factor Rho [KO:K03628]
POS17_0828  dnaK; molecular chaperone DnaK [KO:K04043]
POS17_4814  groEL; chaperonin GroEL [KO:K04077] [EC:5.6.1.7]
POS17_0559  hfq; RNA-binding protein Hfq [KO:K03666]
POS17_5934  polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
POS17_4956  polyphosphate kinase 2 [KO:K22468] [EC:2.7.4.34]
POS17_5242  poly(A) polymerase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
LinkDB

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