KEGG   PATHWAY: pspw00630
Entry
pspw00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia sprentiae
Class
Metabolism; Carbohydrate metabolism
Pathway map
pspw00630  Glyoxylate and dicarboxylate metabolism
pspw00630

Module
pspw_M00012  Glyoxylate cycle [PATH:pspw00630]
pspw_M00621  Glycine cleavage system [PATH:pspw00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia sprentiae [GN:pspw]
Gene
BJG93_03435  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
BJG93_32490  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
BJG93_25740  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
BJG93_33350  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
BJG93_07510  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BJG93_04940  malate synthase G [KO:K01638] [EC:2.3.3.9]
BJG93_03415  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
BJG93_21080  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BJG93_16390  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
BJG93_32190  citrate synthase [KO:K01647] [EC:2.3.3.1]
BJG93_21045  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BJG93_25910  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BJG93_21105  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
BJG93_28590  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BJG93_29345  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BJG93_05205  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
BJG93_05735  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
BJG93_05765  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BJG93_32470  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
BJG93_29030  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
BJG93_33695  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
BJG93_06730  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BJG93_11605  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BJG93_34005  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
BJG93_05760  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
BJG93_28280  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
BJG93_19120  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
BJG93_18255  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
BJG93_10455  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
BJG93_10460  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
BJG93_10465  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
BJG93_10490  catalase [KO:K03781] [EC:1.11.1.6]
BJG93_28845  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BJG93_11655  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BJG93_03990  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BJG93_01535  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BJG93_14855  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BJG93_01575  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
BJG93_19645  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BJG93_19470  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
BJG93_19465  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
BJG93_21300  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BJG93_10130  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BJG93_17740  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BJG93_31240  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BJG93_02810  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BJG93_24600  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
BJG93_10245  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BJG93_26830  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BJG93_13070  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
BJG93_13080  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
BJG93_02880  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BJG93_06795  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BJG93_13075  gcvH; glycine cleavage system protein GcvH [KO:K02437]
BJG93_06090  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
BJG93_06095  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
BJG93_17115  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
BJG93_05580  glycerate kinase [KO:K00865] [EC:2.7.1.165]
BJG93_28840  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BJG93_21830  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BJG93_15465  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BJG93_01095  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
BJG93_01100  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
BJG93_20325  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
BJG93_01105  formate dehydrogenase [KO:K00124]
BJG93_20320  fdxH; formate dehydrogenase subunit beta [KO:K00124]
BJG93_01110  NAD(P)H-dependent oxidoreductase subunit E [KO:K00127]
BJG93_20315  formate dehydrogenase subunit gamma [KO:K00127]
BJG93_16190  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
BJG93_10955  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BJG93_26780  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BJG93_20100  formamidase [KO:K01455] [EC:3.5.1.49]
BJG93_05440  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
BJG93_07260  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
BJG93_31250  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pspw00010  Glycolysis / Gluconeogenesis
pspw00020  Citrate cycle (TCA cycle)
pspw00030  Pentose phosphate pathway
pspw00053  Ascorbate and aldarate metabolism
pspw00071  Fatty acid degradation
pspw00230  Purine metabolism
pspw00250  Alanine, aspartate and glutamate metabolism
pspw00260  Glycine, serine and threonine metabolism
pspw00620  Pyruvate metabolism
pspw00710  Carbon fixation in photosynthetic organisms
pspw00750  Vitamin B6 metabolism
pspw00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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