KEGG   PATHWAY: pspw00030
Entry
pspw00030                   Pathway                                
Name
Pentose phosphate pathway - Paraburkholderia sprentiae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pspw00030  Pentose phosphate pathway
pspw00030

Module
pspw_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pspw00030]
pspw_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pspw00030]
pspw_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pspw00030]
pspw_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pspw00030]
pspw_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pspw00030]
Other DBs
GO: 0006098
Organism
Paraburkholderia sprentiae [GN:pspw]
Gene
BJG93_05260  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BJG93_09020  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BJG93_16940  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BJG93_21955  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BJG93_09025  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
BJG93_20040  beta-propeller fold lactonase family protein [KO:K07404] [EC:3.1.1.31]
BJG93_19235  lactonase family protein [KO:K07404] [EC:3.1.1.31]
BJG93_08370  lactonase family protein [KO:K07404] [EC:3.1.1.31]
BJG93_26655  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BJG93_18575  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BJG93_14860  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BJG93_19440  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BJG93_28290  transketolase family protein [KO:K00615] [EC:2.2.1.1]
BJG93_28295  transketolase [KO:K00615] [EC:2.2.1.1]
BJG93_26495  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
BJG93_15375  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
BJG93_08435  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
BJG93_06430  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
BJG93_26665  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
BJG93_06565  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
BJG93_04070  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
BJG93_09565  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
BJG93_17985  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
BJG93_11065  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BJG93_15460  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
BJG93_15465  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BJG93_22770  SDR family oxidoreductase [KO:K00034] [EC:1.1.1.47]
BJG93_20890  GMC family oxidoreductase [KO:K19813] [EC:1.1.5.9]
BJG93_30990  membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
BJG93_23185  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
BJG93_30060  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
BJG93_03990  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BJG93_01535  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BJG93_15475  gluconokinase [KO:K00851] [EC:2.7.1.12]
BJG93_05740  sugar kinase [KO:K00874] [EC:2.7.1.45]
BJG93_03980  sugar kinase [KO:K00874] [EC:2.7.1.45]
BJG93_26630  fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
BJG93_19445  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
BJG93_15945  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
BJG93_00900  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
BJG93_19455  class 1 fructose-bisphosphatase [KO:K01086] [EC:3.1.3.11 3.1.3.37]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pspw00010  Glycolysis / Gluconeogenesis
pspw00040  Pentose and glucuronate interconversions
pspw00052  Galactose metabolism
pspw00230  Purine metabolism
pspw00240  Pyrimidine metabolism
pspw00340  Histidine metabolism
pspw00630  Glyoxylate and dicarboxylate metabolism
pspw00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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