KEGG   PATHWAY: psty00020
Entry
psty00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pedobacter steynii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psty00020  Citrate cycle (TCA cycle)
psty00020

Module
psty_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psty00020]
psty_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psty00020]
psty_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psty00020]
psty_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psty00020]
psty_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psty00020]
Other DBs
GO: 0006099
Organism
Pedobacter steynii [GN:psty]
Gene
BFS30_25960  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BFS30_12875  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BFS30_13245  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BFS30_07615  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BFS30_26545  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
BFS30_07620  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BFS30_16640  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BFS30_07640  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BFS30_13040  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BFS30_16580  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BFS30_10425  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BFS30_10990  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BFS30_10430  fumarate reductase [KO:K00240] [EC:1.3.5.1]
BFS30_10995  fumarate reductase [KO:K00240] [EC:1.3.5.1]
BFS30_10420  succinate dehydrogenase [KO:K00241]
BFS30_10985  succinate dehydrogenase [KO:K00241]
BFS30_10725  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BFS30_13840  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BFS30_20240  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BFS30_02765  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BFS30_06300  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BFS30_10790  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BFS30_05925  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
BFS30_10795  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psty00010  Glycolysis / Gluconeogenesis
psty00053  Ascorbate and aldarate metabolism
psty00061  Fatty acid biosynthesis
psty00071  Fatty acid degradation
psty00190  Oxidative phosphorylation
psty00220  Arginine biosynthesis
psty00250  Alanine, aspartate and glutamate metabolism
psty00280  Valine, leucine and isoleucine degradation
psty00350  Tyrosine metabolism
psty00470  D-Amino acid metabolism
psty00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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