KEGG   PATHWAY: psv00630
Entry
psv00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas sp. VLB120
Class
Metabolism; Carbohydrate metabolism
Pathway map
psv00630  Glyoxylate and dicarboxylate metabolism
psv00630

Module
psv_M00012  Glyoxylate cycle [PATH:psv00630]
psv_M00621  Glycine cleavage system [PATH:psv00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas sp. VLB120 [GN:psv]
Gene
PVLB_15590  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
PVLB_03575  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
PVLB_08665  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
PVLB_17580  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
PVLB_23460  malate synthase G [KO:K01638] [EC:2.3.3.9]
PVLB_10715  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PVLB_16320  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PVLB_07775  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PVLB_08405  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PVLB_03950  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PVLB_15185  beta-ketothiolase [KO:K00626] [EC:2.3.1.9]
PVLB_22115  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PVLB_12665  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PVLB_08675  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PVLB_18130  dehydratase [KO:K17865] [EC:4.2.1.55]
PVLB_15130  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
PVLB_15135  glcE; glycolate oxidase FAD binding subunit [KO:K11472] [EC:1.1.99.14]
PVLB_15140  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PVLB_00670  katE; hydroperoxidase II [KO:K03781] [EC:1.11.1.6]
PVLB_10305  catalase domain-containing protein [KO:K03781] [EC:1.11.1.6]
PVLB_22795  catalase [KO:K03781] [EC:1.11.1.6]
PVLB_04110  2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PVLB_21275  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
PVLB_00560  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
PVLB_07140  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
PVLB_23125  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PVLB_13450  hypothetical protein [KO:K01091] [EC:3.1.3.18]
PVLB_01935  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PVLB_11055  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PVLB_24605  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PVLB_24610  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PVLB_25090  Glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
PVLB_12140  glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
PVLB_08555  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PVLB_17440  glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
PVLB_18105  Glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
PVLB_23665  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PVLB_21715  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PVLB_24650  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PVLB_20190  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PVLB_24660  gcvT; glycine cleavage system aminomethyltransferase T [KO:K00605] [EC:2.1.2.10]
PVLB_12375  glycine cleavage T protein (aminomethyl transferase) [KO:K00605] [EC:2.1.2.10]
PVLB_12395  glycine cleavage T protein (aminomethyl transferase) [KO:K00605] [EC:2.1.2.10]
PVLB_20200  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
PVLB_16285  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PVLB_25430  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PVLB_17465  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PVLB_24655  glycine cleavage system protein H [KO:K02437]
PVLB_20185  glycine cleavage system protein H [KO:K02437]
PVLB_16825  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
PVLB_10635  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PVLB_16830  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PVLB_16835  tartronic semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
PVLB_12300  glycerate kinase [KO:K00865] [EC:2.7.1.165]
PVLB_16840  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
PVLB_20050  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PVLB_08085  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
PVLB_08080  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
PVLB_22745  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
PVLB_22750  molybdopterin oxidoreductase Fe4S4 region [KO:K00123] [EC:1.17.1.9]
PVLB_08075  NADH dehydrogenase (quinone) [KO:K00124]
PVLB_22740  nitrate-inducible formate dehydrogenase subunit beta [KO:K00124]
PVLB_08070  formate dehydrogenase subunit gamma [KO:K00127]
PVLB_22735  formate dehydrogenase subunit gamma [KO:K00127]
PVLB_04845  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PVLB_23640  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PVLB_12390  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PVLB_15350  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PVLB_02035  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
psv00010  Glycolysis / Gluconeogenesis
psv00020  Citrate cycle (TCA cycle)
psv00030  Pentose phosphate pathway
psv00053  Ascorbate and aldarate metabolism
psv00071  Fatty acid degradation
psv00230  Purine metabolism
psv00250  Alanine, aspartate and glutamate metabolism
psv00260  Glycine, serine and threonine metabolism
psv00620  Pyruvate metabolism
psv00710  Carbon fixation by Calvin cycle
psv00750  Vitamin B6 metabolism
psv00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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