KEGG   PATHWAY: pswi00020
Entry
pswi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoliparis swirei (Mariana hadal snailfish)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pswi00020  Citrate cycle (TCA cycle)
pswi00020

Module
pswi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pswi00020]
pswi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pswi00020]
pswi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pswi00020]
Other DBs
GO: 0006099
Organism
Pseudoliparis swirei (Mariana hadal snailfish) [GN:pswi]
Gene
130200175  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
130188611  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
130204157  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
130188962  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
130212070  aco1; cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
130195134  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
130207684  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
130192903  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
130195152  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
130208785  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
130199486  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
130199840  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
130196421  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
130204918  ogdhb; LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase complex component E1 [KO:K00164] [EC:1.2.4.2]
130201424  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
130202823  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
130195269  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
130190687  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
130208792  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
130204954  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
130212828  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
130208148  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
130199713  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
130210687  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
130191557  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
130189560  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
130191624  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
130211597  pcxb; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
130206179  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
130208361  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
130191829  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a [KO:K00161] [EC:1.2.4.1]
130206033  pdha1b; pyruvate dehydrogenase E1 subunit alpha 1b isoform X1 [KO:K00161] [EC:1.2.4.1]
130208296  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
130191780  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pswi00010  Glycolysis / Gluconeogenesis
pswi00053  Ascorbate and aldarate metabolism
pswi00061  Fatty acid biosynthesis
pswi00062  Fatty acid elongation
pswi00071  Fatty acid degradation
pswi00190  Oxidative phosphorylation
pswi00220  Arginine biosynthesis
pswi00250  Alanine, aspartate and glutamate metabolism
pswi00280  Valine, leucine and isoleucine degradation
pswi00350  Tyrosine metabolism
pswi00470  D-Amino acid metabolism
pswi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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