KEGG   PATHWAY: psyi00020
Entry
psyi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas syringae pv. tagetis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psyi00020  Citrate cycle (TCA cycle)
psyi00020

Module
psyi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psyi00020]
psyi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psyi00020]
psyi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psyi00020]
psyi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psyi00020]
psyi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psyi00020]
Other DBs
GO: 0006099
Organism
Pseudomonas syringae pv. tagetis [GN:psyi]
Gene
MME58_10285  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MME58_17430  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
MME58_08395  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MME58_16320  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MME58_10310  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MME58_10315  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MME58_10320  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MME58_10330  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MME58_10325  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MME58_25685  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
MME58_10300  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MME58_10305  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MME58_10290  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MME58_10295  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
MME58_20635  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MME58_18830  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MME58_21220  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MME58_04830  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
MME58_12565  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
MME58_25895  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
MME58_25890  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
MME58_00470  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MME58_02225  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
MME58_07900  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
MME58_02220  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psyi00010  Glycolysis / Gluconeogenesis
psyi00053  Ascorbate and aldarate metabolism
psyi00061  Fatty acid biosynthesis
psyi00071  Fatty acid degradation
psyi00190  Oxidative phosphorylation
psyi00220  Arginine biosynthesis
psyi00250  Alanine, aspartate and glutamate metabolism
psyi00280  Valine, leucine and isoleucine degradation
psyi00350  Tyrosine metabolism
psyi00470  D-Amino acid metabolism
psyi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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