KEGG   PATHWAY: ptae00020
Entry
ptae00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas taetrolens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptae00020  Citrate cycle (TCA cycle)
ptae00020

Module
ptae_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ptae00020]
ptae_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ptae00020]
ptae_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ptae00020]
ptae_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ptae00020]
ptae_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ptae00020]
Other DBs
GO: 0006099
Organism
Pseudomonas taetrolens [GN:ptae]
Gene
NCTC10697_01469  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC10697_01622  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NCTC10697_03191  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCTC10697_01524  icd2; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCTC10697_01525  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
NCTC10697_01475  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NCTC10697_01476  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
NCTC10697_01477  lpdG; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC10697_02847  lpdV; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC10697_01480  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC10697_01479  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC10697_04416  scpC; acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
NCTC10697_01472  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC10697_01473  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
NCTC10697_01470  sdhC; succinate dehydrogenase [KO:K00241]
NCTC10697_01471  sdhD; succinate dehydrogenase [KO:K00242]
NCTC10697_03241  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NCTC10697_01547  fumC-1; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NCTC10697_03646  fumC_2; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NCTC10697_00814  mqo2; putative malate:quinone oxidoreductase Mqo [KO:K00116] [EC:1.1.5.4]
NCTC10697_02636  mqo_2; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
NCTC10697_04449  cfiB; pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
NCTC10697_04448  cfiA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
NCTC10697_04237  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
NCTC10697_04128  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
NCTC10697_04129  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ptae00010  Glycolysis / Gluconeogenesis
ptae00053  Ascorbate and aldarate metabolism
ptae00061  Fatty acid biosynthesis
ptae00071  Fatty acid degradation
ptae00190  Oxidative phosphorylation
ptae00220  Arginine biosynthesis
ptae00250  Alanine, aspartate and glutamate metabolism
ptae00280  Valine, leucine and isoleucine degradation
ptae00350  Tyrosine metabolism
ptae00470  D-Amino acid metabolism
ptae00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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