KEGG   PATHWAY: ptl00020
Entry
ptl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Parageobacillus thermoglucosidasius DSM 2542
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptl00020  Citrate cycle (TCA cycle)
ptl00020

Module
ptl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ptl00020]
ptl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ptl00020]
ptl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ptl00020]
ptl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ptl00020]
ptl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ptl00020]
Other DBs
GO: 0006099
Organism
Parageobacillus thermoglucosidasius DSM 2542 [GN:ptl]
Gene
AOT13_18125  citrate synthase [KO:K01647] [EC:2.3.3.1]
AOT13_09820  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AOT13_18120  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AOT13_08115  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
AOT13_08120  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AOT13_08295  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOT13_14850  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOT13_16345  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOT13_09485  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AOT13_09490  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AOT13_09020  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AOT13_09015  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AOT13_05775  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AOT13_17790  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AOT13_17785  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AOT13_17795  succinate dehydrogenase [KO:K00241]
AOT13_05645  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AOT13_18115  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AOT13_05340  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AOT13_08405  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AOT13_18565  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AOT13_01775  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
AOT13_08280  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
AOT13_08285  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AOT13_01770  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AOT13_10280  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
AOT13_10930  dihydrolipoyllysine acetyltransferase [KO:K00627] [EC:2.3.1.12]
AOT13_08290  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
AOT13_01780  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ptl00010  Glycolysis / Gluconeogenesis
ptl00053  Ascorbate and aldarate metabolism
ptl00061  Fatty acid biosynthesis
ptl00071  Fatty acid degradation
ptl00190  Oxidative phosphorylation
ptl00220  Arginine biosynthesis
ptl00250  Alanine, aspartate and glutamate metabolism
ptl00280  Valine, leucine and isoleucine degradation
ptl00350  Tyrosine metabolism
ptl00470  D-Amino acid metabolism
ptl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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