KEGG   PATHWAY: ptq00020
Entry
ptq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Psychroflexus torquis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptq00020  Citrate cycle (TCA cycle)
ptq00020

Module
ptq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ptq00020]
ptq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ptq00020]
ptq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ptq00020]
ptq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ptq00020]
ptq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ptq00020]
Other DBs
GO: 0006099
Organism
Psychroflexus torquis [GN:ptq]
Gene
P700755_000985  citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
P700755_003054  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
P700755_002498  isocitrate dehydrogenase Icd [KO:K00031] [EC:1.1.1.42]
P700755_003344  isocitrate dehydrogenase (NADP+) Icd [KO:K00031] [EC:1.1.1.42]
P700755_002441  2-oxoglutarate dehydrogenase complex, E1 component SucA [KO:K00164] [EC:1.2.4.2]
P700755_002442  2-oxoglutarate dehydrogenase complex, dihydrolipoamide succinyltransferase E2 component SucB [KO:K00658] [EC:2.3.1.61]
P700755_003187  branched-chain alpha-keto acid dehydrogenase, dihydrolipoamide acyltransferase (E2 subunit) [KO:K00658] [EC:2.3.1.61]
P700755_000789  2-oxoisovalerate dehydrogenase, dihydrolipoamide acyltransferase component AceF [KO:K00658] [EC:2.3.1.61]
P700755_003260  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
P700755_003352  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
P700755_003870  succinyl-CoA ligase (ADP-forming) alpha chain SucD [KO:K01902] [EC:6.2.1.5]
P700755_003101  succinyl-CoA synthetase (ADP-forming) beta chain SucC [KO:K01903] [EC:6.2.1.5]
P700755_002052  succinate dehydrogenase flavoprotein subunit SdhA [KO:K00239] [EC:1.3.5.1]
P700755_002053  succinate dehydrogenase iron-sulfur protein SdhB [KO:K00240] [EC:1.3.5.1]
P700755_002051  succinate dehydrogenase cytochrome b subunit SdhC [KO:K00241]
P700755_000508  fumarate hydratase FumC [KO:K01679] [EC:4.2.1.2]
P700755_002629  malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
P700755_001824  pyruvate carboxylase PycA [KO:K01958] [EC:6.4.1.1]
P700755_001043  phosphoenolpyruvate carboxykinase PckA [KO:K01610] [EC:4.1.1.49]
P700755_002513  pyruvate dehydrogenase complex, E1 component alpha subunit AcoA [KO:K00161] [EC:1.2.4.1]
P700755_003072  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
P700755_002514  pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase AceF [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ptq00010  Glycolysis / Gluconeogenesis
ptq00053  Ascorbate and aldarate metabolism
ptq00061  Fatty acid biosynthesis
ptq00062  Fatty acid elongation
ptq00071  Fatty acid degradation
ptq00190  Oxidative phosphorylation
ptq00220  Arginine biosynthesis
ptq00250  Alanine, aspartate and glutamate metabolism
ptq00280  Valine, leucine and isoleucine degradation
ptq00350  Tyrosine metabolism
ptq00470  D-Amino acid metabolism
ptq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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