KEGG   PATHWAY: ptro00030
Entry
ptro00030                   Pathway                                
Name
Pentose phosphate pathway - Paraburkholderia tropica
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptro00030  Pentose phosphate pathway
ptro00030

Module
ptro_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ptro00030]
ptro_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ptro00030]
ptro_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ptro00030]
ptro_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ptro00030]
ptro_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ptro00030]
Other DBs
GO: 0006098
Organism
Paraburkholderia tropica [GN:ptro]
Gene
G5S35_07375  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
G5S35_25245  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
G5S35_27125  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
G5S35_10940  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
G5S35_15030  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
G5S35_10945  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
G5S35_28120  lactonase family protein [KO:K07404] [EC:3.1.1.31]
G5S35_31585  lactonase family protein [KO:K07404] [EC:3.1.1.31]
G5S35_36420  lactonase family protein [KO:K07404] [EC:3.1.1.31]
G5S35_04340  lactonase family protein [KO:K07404] [EC:3.1.1.31]
G5S35_16080  lactonase family protein [KO:K07404] [EC:3.1.1.31]
G5S35_20215  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
G5S35_12755  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
G5S35_24955  transketolase family protein [KO:K00615] [EC:2.2.1.1]
G5S35_24960  transketolase [KO:K00615] [EC:2.2.1.1]
G5S35_28735  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
G5S35_01845  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
G5S35_38240  transketolase family protein [KO:K00615] [EC:2.2.1.1]
G5S35_38245  transketolase [KO:K00615] [EC:2.2.1.1]
G5S35_04275  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
G5S35_08510  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
G5S35_15525  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
G5S35_17030  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
G5S35_26145  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
G5S35_07025  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
G5S35_17015  ribokinase [KO:K00852] [EC:2.7.1.15]
G5S35_03225  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
G5S35_20105  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
G5S35_01475  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
G5S35_01920  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
G5S35_01925  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
G5S35_27850  GMC family oxidoreductase [KO:K19813] [EC:1.1.5.9]
G5S35_36125  glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
G5S35_29430  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
G5S35_32525  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
G5S35_34175  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
G5S35_36400  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
G5S35_29550  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
G5S35_34570  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
G5S35_18000  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
G5S35_29545  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
G5S35_34575  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
G5S35_17995  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
G5S35_06940  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
G5S35_10085  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
G5S35_01935  gluconokinase [KO:K00851] [EC:2.7.1.12]
G5S35_23860  sugar kinase [KO:K00874] [EC:2.7.1.45]
G5S35_06930  sugar kinase [KO:K00874] [EC:2.7.1.45]
G5S35_07600  sugar kinase [KO:K00874] [EC:2.7.1.45]
G5S35_15840  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
G5S35_11855  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
G5S35_10645  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ptro00010  Glycolysis / Gluconeogenesis
ptro00040  Pentose and glucuronate interconversions
ptro00052  Galactose metabolism
ptro00230  Purine metabolism
ptro00240  Pyrimidine metabolism
ptro00340  Histidine metabolism
ptro00630  Glyoxylate and dicarboxylate metabolism
ptro00750  Vitamin B6 metabolism
KO pathway
ko00030   
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