KEGG   PATHWAY: pun00020
Entry
pun00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Polaribacter undariae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pun00020  Citrate cycle (TCA cycle)
pun00020

Module
pun_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pun00020]
pun_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pun00020]
pun_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pun00020]
pun_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pun00020]
pun_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pun00020]
Other DBs
GO: 0006099
Organism
Polaribacter undariae [GN:pun]
Gene
NQP51_16520  citrate synthase [KO:K01647] [EC:2.3.3.1]
NQP51_02955  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NQP51_02960  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NQP51_17935  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NQP51_08390  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NQP51_08395  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NQP51_00130  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
NQP51_06490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQP51_10390  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQP51_01780  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NQP51_17665  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NQP51_11390  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NQP51_11385  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NQP51_11395  succinate dehydrogenase cytochrome b subunit [KO:K00241]
NQP51_04510  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NQP51_15995  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NQP51_04440  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
NQP51_18180  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
NQP51_05195  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NQP51_14765  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NQP51_07790  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NQP51_14810  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
NQP51_07795  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pun00010  Glycolysis / Gluconeogenesis
pun00053  Ascorbate and aldarate metabolism
pun00061  Fatty acid biosynthesis
pun00071  Fatty acid degradation
pun00190  Oxidative phosphorylation
pun00220  Arginine biosynthesis
pun00250  Alanine, aspartate and glutamate metabolism
pun00280  Valine, leucine and isoleucine degradation
pun00350  Tyrosine metabolism
pun00470  D-Amino acid metabolism
pun00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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