KEGG   PATHWAY: pvs00020
Entry
pvs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Planktophila versatilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvs00020  Citrate cycle (TCA cycle)
pvs00020

Module
pvs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pvs00020]
pvs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pvs00020]
Other DBs
GO: 0006099
Organism
Candidatus Planktophila versatilis [GN:pvs]
Gene
A1sIA79_00425  citrate synthase [KO:K01647] [EC:2.3.3.1]
A1sIA79_03970  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
A1sIA79_05165  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A1sIA79_00925  kgd; 2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
A1sIA79_03780  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A1sIA79_05200  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
A1sIA79_05205  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
A1sIA79_06615  succinate dehydrogenase / fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A1sIA79_06610  succinate dehydrogenase / fumarate reductase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A1sIA79_00750  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
A1sIA79_05170  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A1sIA79_01280  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
A1sIA79_03785  2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pvs00010  Glycolysis / Gluconeogenesis
pvs00053  Ascorbate and aldarate metabolism
pvs00061  Fatty acid biosynthesis
pvs00071  Fatty acid degradation
pvs00190  Oxidative phosphorylation
pvs00220  Arginine biosynthesis
pvs00250  Alanine, aspartate and glutamate metabolism
pvs00280  Valine, leucine and isoleucine degradation
pvs00350  Tyrosine metabolism
pvs00470  D-Amino acid metabolism
pvs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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