KEGG   PATHWAY: pvu00630
Entry
pvu00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Phaseolus vulgaris (common bean)
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvu00630  Glyoxylate and dicarboxylate metabolism
pvu00630

Module
pvu_M00012  Glyoxylate cycle [PATH:pvu00630]
pvu_M00532  Photorespiration [PATH:pvu00630]
pvu_M00621  Glycine cleavage system [PATH:pvu00630]
Other DBs
GO: 0046487 0043648
Organism
Phaseolus vulgaris (common bean) [GN:pvu]
Gene
PHAVU_011G105500g  hypothetical protein [KO:K01637] [EC:4.1.3.1]
PHAVU_001G097800g  hypothetical protein [KO:K01895] [EC:6.2.1.1]
PHAVU_003G111400g  hypothetical protein [KO:K01913] [EC:6.2.1.1 6.2.1.2]
PHAVU_006G122900g  hypothetical protein [KO:K01913] [EC:6.2.1.1 6.2.1.2]
PHAVU_003G209100g  hypothetical protein [KO:K01638] [EC:2.3.3.9]
PHAVU_003G209200g  hypothetical protein [KO:K01638] [EC:2.3.3.9]
PHAVU_010G055700g  hypothetical protein [KO:K00025] [EC:1.1.1.37]
PHAVU_007G273500g  hypothetical protein [KO:K00025] [EC:1.1.1.37]
PHAVU_011G159000g  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PHAVU_002G216800g  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PHAVU_003G189700g  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PHAVU_005G041600g  hypothetical protein [KO:K01647] [EC:2.3.3.1]
PHAVU_006G035500g  hypothetical protein [KO:K01647] [EC:2.3.3.1]
PHAVU_011G1037001  hypothetical protein [KO:K01681] [EC:4.2.1.3]
PHAVU_002G105000g  hypothetical protein [KO:K01681] [EC:4.2.1.3]
PHAVU_005G115100g  hypothetical protein [KO:K01681] [EC:4.2.1.3]
PHAVU_003G087600g  hypothetical protein [KO:K00626] [EC:2.3.1.9]
PHAVU_008G288400g  hypothetical protein [KO:K00626] [EC:2.3.1.9]
PHAVU_005G051800g  hypothetical protein [KO:K11517] [EC:1.1.3.15]
PHAVU_002G180300g  hypothetical protein [KO:K11517] [EC:1.1.3.15]
PHAVU_001G001000g  hypothetical protein [KO:K03781] [EC:1.11.1.6]
PHAVU_009G011100g  hypothetical protein [KO:K03781] [EC:1.11.1.6]
PHAVU_010G087100g  hypothetical protein [KO:K15919] [EC:1.1.1.79 1.1.1.81]
PHAVU_010G109500g  hypothetical protein [KO:K18121] [EC:1.1.1.79 1.1.1.-]
PHAVU_010G109600g  hypothetical protein [KO:K18121] [EC:1.1.1.79 1.1.1.-]
PHAVU_010G1097000  hypothetical protein [KO:K18121] [EC:1.1.1.79 1.1.1.-]
PHAVU_005G158300g  hypothetical protein [KO:K18121] [EC:1.1.1.79 1.1.1.-]
PHAVU_007G019300g  hypothetical protein [KO:K15893] [EC:1.1.1.29]
PHAVU_006G136400g  hypothetical protein [KO:K19269] [EC:3.1.3.18 3.1.3.48]
PHAVU_008G051700g  hypothetical protein [KO:K19269] [EC:3.1.3.18 3.1.3.48]
PHAVU_009G144500g  hypothetical protein [KO:K01601] [EC:4.1.1.39]
PhvuCp06  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
PHAVU_004G073400g  hypothetical protein [KO:K01602] [EC:4.1.1.39]
PHAVU_004G064800g  hypothetical protein [KO:K01602] [EC:4.1.1.39]
PHAVU_004G064900g  hypothetical protein [KO:K01602] [EC:4.1.1.39]
PHAVU_006G029100g  hypothetical protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
PHAVU_002G150800g  hypothetical protein [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
PHAVU_001G123900g  hypothetical protein [KO:K00284] [EC:1.4.7.1]
PHAVU_001G229500g  hypothetical protein [KO:K01915] [EC:6.3.1.2]
PHAVU_006G155800g  hypothetical protein [KO:K01915] [EC:6.3.1.2]
PHAVU_004G148300g  hypothetical protein [KO:K01915] [EC:6.3.1.2]
PHAVU_008G237400g  hypothetical protein [KO:K01915] [EC:6.3.1.2]
PHAVU_008G237500g  hypothetical protein [KO:K01915] [EC:6.3.1.2]
PHAVU_009G0264000  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_006G168300g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_003G286600g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_006G216000g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_001G266600g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_008G184200g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_002G313300g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_003G051100g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_001G035500g  hypothetical protein [KO:K00281] [EC:1.4.4.2]
PHAVU_009G077400g  hypothetical protein [KO:K00281] [EC:1.4.4.2]
PHAVU_003G080400g  hypothetical protein [KO:K00605] [EC:2.1.2.10]
PHAVU_006G148700g  hypothetical protein [KO:K00605] [EC:2.1.2.10]
PHAVU_003G112300g  hypothetical protein [KO:K00382] [EC:1.8.1.4]
PHAVU_003G118800g  hypothetical protein [KO:K00382] [EC:1.8.1.4]
PHAVU_009G254900g  hypothetical protein [KO:K00382] [EC:1.8.1.4]
PHAVU_003G122000g  hypothetical protein [KO:K02437]
PHAVU_002G006000g  hypothetical protein [KO:K02437]
PHAVU_007G233300g  hypothetical protein [KO:K02437]
PHAVU_005G173200g  hypothetical protein [KO:K15918] [EC:2.7.1.31]
PHAVU_004G0146000  hypothetical protein [KO:K00122] [EC:1.17.1.9]
PHAVU_004G0147000  hypothetical protein [KO:K00122] [EC:1.17.1.9]
PHAVU_004G014800g  hypothetical protein [KO:K00122] [EC:1.17.1.9]
PHAVU_003G221600g  hypothetical protein [KO:K01433] [EC:3.5.1.10]
PHAVU_002G057400g  hypothetical protein [KO:K01433] [EC:3.5.1.10]
PHAVU_003G236000g  hypothetical protein [KO:K01455] [EC:3.5.1.49]
PHAVU_007G071000g  hypothetical protein [KO:K22133] [EC:6.2.1.8]
PHAVU_006G079500g  hypothetical protein [KO:K22133] [EC:6.2.1.8]
PHAVU_004G114600g  hypothetical protein [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pvu00010  Glycolysis / Gluconeogenesis
pvu00020  Citrate cycle (TCA cycle)
pvu00030  Pentose phosphate pathway
pvu00053  Ascorbate and aldarate metabolism
pvu00071  Fatty acid degradation
pvu00230  Purine metabolism
pvu00250  Alanine, aspartate and glutamate metabolism
pvu00260  Glycine, serine and threonine metabolism
pvu00620  Pyruvate metabolism
pvu00710  Carbon fixation by Calvin cycle
pvu00750  Vitamin B6 metabolism
pvu00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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