KEGG   PATHWAY: pvu00020
Entry
pvu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Phaseolus vulgaris (common bean)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvu00020  Citrate cycle (TCA cycle)
pvu00020

Module
pvu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pvu00020]
pvu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pvu00020]
pvu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pvu00020]
Other DBs
GO: 0006099
Organism
Phaseolus vulgaris (common bean) [GN:pvu]
Gene
PHAVU_005G041600g  hypothetical protein [KO:K01647] [EC:2.3.3.1]
PHAVU_006G035500g  hypothetical protein [KO:K01647] [EC:2.3.3.1]
PHAVU_006G118100g  hypothetical protein [KO:K01648] [EC:2.3.3.8]
PHAVU_003G114300g  hypothetical protein [KO:K01648] [EC:2.3.3.8]
PHAVU_005G043500g  hypothetical protein [KO:K01648] [EC:2.3.3.8]
PHAVU_002G064600g  hypothetical protein [KO:K01648] [EC:2.3.3.8]
PHAVU_001G222900g  hypothetical protein [KO:K01648] [EC:2.3.3.8]
PHAVU_011G1037001  hypothetical protein [KO:K01681] [EC:4.2.1.3]
PHAVU_002G105000g  hypothetical protein [KO:K01681] [EC:4.2.1.3]
PHAVU_005G115100g  hypothetical protein [KO:K01681] [EC:4.2.1.3]
PHAVU_004G011200g  hypothetical protein [KO:K00031] [EC:1.1.1.42]
PHAVU_008G239900g  hypothetical protein [KO:K00031] [EC:1.1.1.42]
PHAVU_005G043900g  hypothetical protein [KO:K00031] [EC:1.1.1.42]
PHAVU_003G268900g  hypothetical protein [KO:K00030] [EC:1.1.1.41]
PHAVU_008G291500g  hypothetical protein [KO:K00030] [EC:1.1.1.41]
PHAVU_002G114600g  hypothetical protein [KO:K00030] [EC:1.1.1.41]
PHAVU_007G150400g  hypothetical protein [KO:K00030] [EC:1.1.1.41]
PHAVU_007G011400g  hypothetical protein [KO:K00164] [EC:1.2.4.2]
PHAVU_008G014400g  hypothetical protein [KO:K00164] [EC:1.2.4.2]
PHAVU_008G269300g  hypothetical protein [KO:K00658] [EC:2.3.1.61]
PHAVU_003G112300g  hypothetical protein [KO:K00382] [EC:1.8.1.4]
PHAVU_003G118800g  hypothetical protein [KO:K00382] [EC:1.8.1.4]
PHAVU_009G254900g  hypothetical protein [KO:K00382] [EC:1.8.1.4]
PHAVU_004G139300g  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
PHAVU_007G190800g  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
PHAVU_003G253200g  hypothetical protein [KO:K00234] [EC:1.3.5.1]
PHAVU_002G029800g  hypothetical protein [KO:K00234] [EC:1.3.5.1]
PHAVU_011G103900g  hypothetical protein [KO:K00236]
PHAVU_008G036400g  hypothetical protein [KO:K00236]
PHAVU_009G182700g  hypothetical protein [KO:K25801]
PHAVU_007G217600g  hypothetical protein [KO:K01679] [EC:4.2.1.2]
PHAVU_007G217700g  hypothetical protein [KO:K01679] [EC:4.2.1.2]
PHAVU_010G055700g  hypothetical protein [KO:K00025] [EC:1.1.1.37]
PHAVU_007G273500g  hypothetical protein [KO:K00025] [EC:1.1.1.37]
PHAVU_011G159000g  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PHAVU_002G216800g  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PHAVU_003G189700g  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PHAVU_002G139200g  hypothetical protein [KO:K01610] [EC:4.1.1.49]
PHAVU_003G285900g  hypothetical protein [KO:K01610] [EC:4.1.1.49]
PHAVU_009G257800g  hypothetical protein [KO:K00161] [EC:1.2.4.1]
PHAVU_010G119600g  hypothetical protein [KO:K00161] [EC:1.2.4.1]
PHAVU_002G077600g  hypothetical protein [KO:K00161] [EC:1.2.4.1]
PHAVU_003G056300g  hypothetical protein [KO:K00161] [EC:1.2.4.1]
PHAVU_008G000800g  hypothetical protein [KO:K00162] [EC:1.2.4.1]
PHAVU_006G165600g  hypothetical protein [KO:K00162] [EC:1.2.4.1]
PHAVU_007G026300g  hypothetical protein [KO:K00627] [EC:2.3.1.12]
PHAVU_010G134600g  hypothetical protein [KO:K00627] [EC:2.3.1.12]
PHAVU_007G106200g  hypothetical protein [KO:K00627] [EC:2.3.1.12]
PHAVU_007G090300g  hypothetical protein [KO:K00627] [EC:2.3.1.12]
PHAVU_003G035200g  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pvu00010  Glycolysis / Gluconeogenesis
pvu00053  Ascorbate and aldarate metabolism
pvu00061  Fatty acid biosynthesis
pvu00062  Fatty acid elongation
pvu00071  Fatty acid degradation
pvu00190  Oxidative phosphorylation
pvu00220  Arginine biosynthesis
pvu00250  Alanine, aspartate and glutamate metabolism
pvu00280  Valine, leucine and isoleucine degradation
pvu00350  Tyrosine metabolism
pvu00470  D-Amino acid metabolism
pvu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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