KEGG   PATHWAY: pvy00020
Entry
pvy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pistacia vera (pistachio)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvy00020  Citrate cycle (TCA cycle)
pvy00020

Module
pvy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pvy00020]
pvy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pvy00020]
pvy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pvy00020]
Other DBs
GO: 0006099
Organism
Pistacia vera (pistachio) [GN:pvy]
Gene
116116065  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
116116075  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
116133215  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
116135451  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
116115775  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
116110389  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
116136923  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
116137237  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
116120836  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
116129334  aconitate hydratase 3, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
116142076  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
116117998  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
116107715  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
116134475  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
116134500  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
116144400  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
116128801  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
116133942  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
116143235  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
116122790  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
116122832  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
116110904  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
116116040  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
116135384  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
116113018  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
116113091  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
116123444  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
116107816  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
116146706  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
116146733  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
116121985  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
116110827  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
116128092  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
116141546  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
116142502  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
116142899  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
116122330  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
116126744  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
116137691  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
116122295  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
116141137  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
116117220  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
116117249  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
116109036  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
116135742  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
116140747  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
116140756  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
116140759  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
116105193  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
116105209  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
116136401  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
116136980  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
116104853  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
116107442  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
116109794  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pvy00010  Glycolysis / Gluconeogenesis
pvy00053  Ascorbate and aldarate metabolism
pvy00061  Fatty acid biosynthesis
pvy00062  Fatty acid elongation
pvy00071  Fatty acid degradation
pvy00190  Oxidative phosphorylation
pvy00220  Arginine biosynthesis
pvy00250  Alanine, aspartate and glutamate metabolism
pvy00280  Valine, leucine and isoleucine degradation
pvy00350  Tyrosine metabolism
pvy00470  D-Amino acid metabolism
pvy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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