KEGG   PATHWAY: pxa00020
Entry
pxa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas xanthosomatis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pxa00020  Citrate cycle (TCA cycle)
pxa00020

Module
pxa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pxa00020]
pxa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pxa00020]
pxa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pxa00020]
pxa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pxa00020]
pxa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pxa00020]
Other DBs
GO: 0006099
Organism
Pseudomonas xanthosomatis [GN:pxa]
Gene
KSS93_20825  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KSS93_11745  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KSS93_12515  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KSS93_13495  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KSS93_13500  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KSS93_20800  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KSS93_20795  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KSS93_20790  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS93_21960  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS93_02140  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS93_20780  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KSS93_20785  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KSS93_01405  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
KSS93_20810  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KSS93_20805  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KSS93_20820  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KSS93_20815  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KSS93_08430  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KSS93_10280  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KSS93_24520  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KSS93_11785  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KSS93_14330  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KSS93_22865  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KSS93_25455  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KSS93_02250  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
KSS93_02255  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
KSS93_03335  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KSS93_05075  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KSS93_05070  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pxa00010  Glycolysis / Gluconeogenesis
pxa00053  Ascorbate and aldarate metabolism
pxa00061  Fatty acid biosynthesis
pxa00071  Fatty acid degradation
pxa00190  Oxidative phosphorylation
pxa00220  Arginine biosynthesis
pxa00250  Alanine, aspartate and glutamate metabolism
pxa00280  Valine, leucine and isoleucine degradation
pxa00350  Tyrosine metabolism
pxa00470  D-Amino acid metabolism
pxa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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