KEGG   PATHWAY: pxu00020
Entry
pxu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Papilio xuthus (Asian swallowtail)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pxu00020  Citrate cycle (TCA cycle)
pxu00020

Module
pxu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pxu00020]
pxu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pxu00020]
pxu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pxu00020]
pxu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pxu00020]
pxu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pxu00020]
Other DBs
GO: 0006099
Organism
Papilio xuthus (Asian swallowtail) [GN:pxu]
Gene
106126394  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
106115279  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
106125993  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
106121239  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
106117181  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
106128500  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
106122549  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
106116367  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
106124804  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
106125315  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
106128475  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
106122833  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
106120020  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
106125487  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
106116677  succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
106117118  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106117359  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106126733  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
106113892  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
106116130  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
106120676  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
106122134  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
106113894  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
106119945  putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
106121658  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
106122436  uncharacterized protein LOC106122436 [KO:K00025] [EC:1.1.1.37]
106123897  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
106115441  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
106123351  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
106123353  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
106117962  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
106126810  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
106127774  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
106113774  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
106125961  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
106120745  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
106120746  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
106115224  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
106126781  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pxu00010  Glycolysis / Gluconeogenesis
pxu00053  Ascorbate and aldarate metabolism
pxu00061  Fatty acid biosynthesis
pxu00062  Fatty acid elongation
pxu00071  Fatty acid degradation
pxu00190  Oxidative phosphorylation
pxu00220  Arginine biosynthesis
pxu00250  Alanine, aspartate and glutamate metabolism
pxu00280  Valine, leucine and isoleucine degradation
pxu00350  Tyrosine metabolism
pxu00470  D-Amino acid metabolism
pxu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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