KEGG   PATHWAY: qsa00020
Entry
qsa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Quillaja saponaria (soapbark tree)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
qsa00020  Citrate cycle (TCA cycle)
qsa00020

Module
qsa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:qsa00020]
qsa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:qsa00020]
qsa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:qsa00020]
Other DBs
GO: 0006099
Organism
Quillaja saponaria (soapbark tree) [GN:qsa]
Gene
O6P43_001296  Citrate synthase [KO:K01647] [EC:2.3.3.1]
O6P43_029469  Citrate synthase [KO:K01647] [EC:2.3.3.1]
O6P43_013765  Citrate synthase [KO:K01647] [EC:2.3.3.1]
O6P43_021110  Citrate synthase [KO:K01647] [EC:2.3.3.1]
O6P43_025273  ATP-citrate synthase alpha chain protein [KO:K01648] [EC:2.3.3.8]
O6P43_010996  ATP-citrate synthase alpha chain protein like [KO:K01648] [EC:2.3.3.8]
O6P43_003677  ATP-citrate synthase beta chain protein [KO:K01648] [EC:2.3.3.8]
O6P43_021863  ATP-citrate synthase beta chain protein [KO:K01648] [EC:2.3.3.8]
O6P43_033184  ATP-citrate synthase alpha chain protein [KO:K01648] [EC:2.3.3.8]
O6P43_033186  ATP-citrate synthase alpha chain protein [KO:K01648] [EC:2.3.3.8]
O6P43_024910  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
O6P43_000577  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
O6P43_028676  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
O6P43_033567  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
O6P43_008937  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
O6P43_029434  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
O6P43_020542  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
O6P43_004647  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
O6P43_014244  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
O6P43_010285  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
O6P43_011391  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
O6P43_002184  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
O6P43_006655  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
O6P43_033532  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
O6P43_009358  putative 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
O6P43_030774  putative 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
O6P43_005700  putative 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
O6P43_022592  putative 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
O6P43_013686  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
O6P43_021190  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
O6P43_003631  Dihydrolipoyl dehydrogenase-like protein [KO:K00382] [EC:1.8.1.4]
O6P43_003717  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
O6P43_021830  Dihydrolipoyl dehydrogenase-like protein [KO:K00382] [EC:1.8.1.4]
O6P43_021907  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
O6P43_008400  Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
O6P43_005296  Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
O6P43_010478  Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
O6P43_006874  Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
O6P43_024753  Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
O6P43_033717  Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
O6P43_004748  Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
O6P43_008859  Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
O6P43_029750  Succinate dehydrogenase subunit 3 [KO:K00236]
O6P43_007209  Fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
O6P43_010818  Fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
O6P43_027000  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
O6P43_003207  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
O6P43_021417  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
O6P43_033960  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
O6P43_001022  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
O6P43_001961  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
O6P43_029164  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
O6P43_012476  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
O6P43_012743  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
O6P43_031704  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
O6P43_031912  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
O6P43_022854  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
O6P43_025170  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
O6P43_019525  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
O6P43_025364  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
O6P43_027435  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
O6P43_018521  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
O6P43_033097  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
O6P43_023806  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
O6P43_001630  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
O6P43_012984  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
O6P43_008012  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
O6P43_025698  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
O6P43_004097  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
O6P43_021089  Acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
O6P43_004952  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
O6P43_014800  Acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
O6P43_032762  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
qsa00010  Glycolysis / Gluconeogenesis
qsa00053  Ascorbate and aldarate metabolism
qsa00061  Fatty acid biosynthesis
qsa00062  Fatty acid elongation
qsa00071  Fatty acid degradation
qsa00190  Oxidative phosphorylation
qsa00220  Arginine biosynthesis
qsa00250  Alanine, aspartate and glutamate metabolism
qsa00280  Valine, leucine and isoleucine degradation
qsa00350  Tyrosine metabolism
qsa00470  D-Amino acid metabolism
qsa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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