KEGG   PATHWAY: qso00020
Entry
qso00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Qipengyuania soli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
qso00020  Citrate cycle (TCA cycle)
qso00020

Module
qso_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:qso00020]
qso_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:qso00020]
qso_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:qso00020]
qso_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:qso00020]
qso_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:qso00020]
Other DBs
GO: 0006099
Organism
Qipengyuania soli [GN:qso]
Gene
IRL76_06005  citrate synthase [KO:K01647] [EC:2.3.3.1]
IRL76_00040  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
IRL76_07320  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IRL76_07640  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
IRL76_07645  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
IRL76_05660  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IRL76_07650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IRL76_06515  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IRL76_06510  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IRL76_07635  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IRL76_12430  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IRL76_06600  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IRL76_06245  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IRL76_06610  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
IRL76_06605  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
IRL76_12905  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IRL76_07630  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IRL76_02600  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
IRL76_05870  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
IRL76_05865  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
IRL76_05645  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
qso00010  Glycolysis / Gluconeogenesis
qso00053  Ascorbate and aldarate metabolism
qso00061  Fatty acid biosynthesis
qso00071  Fatty acid degradation
qso00190  Oxidative phosphorylation
qso00220  Arginine biosynthesis
qso00250  Alanine, aspartate and glutamate metabolism
qso00280  Valine, leucine and isoleucine degradation
qso00350  Tyrosine metabolism
qso00470  D-Amino acid metabolism
qso00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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