KEGG   PATHWAY: qsu00020
Entry
qsu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Quercus suber (cork oak)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
qsu00020  Citrate cycle (TCA cycle)
qsu00020

Module
qsu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:qsu00020]
qsu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:qsu00020]
qsu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:qsu00020]
Other DBs
GO: 0006099
Organism
Quercus suber (cork oak) [GN:qsu]
Gene
112006482  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
112011005  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
112028079  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
112033998  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
111988996  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
112028718  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
112028923  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
112041210  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
112041211  ATP-citrate synthase alpha chain protein 2-like isoform X1 [KO:K01648] [EC:2.3.3.8]
112000315  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
112022786  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
112034847  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
111993071  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
112037343  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
112033615  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
111996349  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
112007293  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
112025313  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
112040572  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
112040538  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
111990971  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
112031674  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
112039677  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
111987391  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
112007313  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
112022356  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
112024387  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
112002238  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
112019705  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
112031649  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
112003267  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
111985465  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111996651  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
112007030  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
111992311  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
112039496  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111995660  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111984373  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111999635  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
112025499  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
112031447  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111984861  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
111995761  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
112005668  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
112039751  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
112018526  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
112018528  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111991581  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
111992185  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
112022309  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
111998695  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
112016385  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
111997603  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
112032535  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
112008527  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
112008575  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
112017393  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
111983265  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
111991035  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
112001786  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
112031137  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
111992682  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
112004910  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
112026449  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
112030134  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
qsu00010  Glycolysis / Gluconeogenesis
qsu00053  Ascorbate and aldarate metabolism
qsu00061  Fatty acid biosynthesis
qsu00062  Fatty acid elongation
qsu00071  Fatty acid degradation
qsu00190  Oxidative phosphorylation
qsu00220  Arginine biosynthesis
qsu00250  Alanine, aspartate and glutamate metabolism
qsu00280  Valine, leucine and isoleucine degradation
qsu00350  Tyrosine metabolism
qsu00470  D-Amino acid metabolism
qsu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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