KEGG   PATHWAY: rad00020
Entry
rad00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium acidisoli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rad00020  Citrate cycle (TCA cycle)
rad00020

Module
rad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rad00020]
rad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rad00020]
rad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rad00020]
rad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rad00020]
rad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rad00020]
Other DBs
GO: 0006099
Organism
Rhizobium acidisoli [GN:rad]
Gene
CO657_08135  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CO657_09180  citrate synthase [KO:K01647] [EC:2.3.3.1]
CO657_09185  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CO657_02995  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CO657_19130  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CO657_09800  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CO657_18840  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CO657_18830  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CO657_35185  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CO657_08195  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CO657_18805  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CO657_18845  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CO657_18855  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CO657_18890  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CO657_18880  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CO657_18900  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CO657_36490  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CO657_18895  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CO657_10140  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CO657_10130  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CO657_18860  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CO657_19635  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CO657_20410  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CO657_08170  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CO657_08175  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CO657_08180  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rad00010  Glycolysis / Gluconeogenesis
rad00053  Ascorbate and aldarate metabolism
rad00061  Fatty acid biosynthesis
rad00071  Fatty acid degradation
rad00190  Oxidative phosphorylation
rad00220  Arginine biosynthesis
rad00250  Alanine, aspartate and glutamate metabolism
rad00280  Valine, leucine and isoleucine degradation
rad00350  Tyrosine metabolism
rad00470  D-Amino acid metabolism
rad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system